Crassostrea virginica (eastern oyster): 111125645
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Entry
111125645 CDS
T09197
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit PAN3-like
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111125645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111125645
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111125645
mRNA degradation factors
3'-5' decay
Pan complex
111125645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf_CCCH_4
Pkinase
zf-CCCH_4
zf-CCCH
zf-CCCH_9
zf-CCCH_2
Torus
Motif
Other DBs
NCBI-GeneID:
111125645
NCBI-ProteinID:
XP_022325359
UniProt:
A0A8B8DCU8
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Position
3:12632472..12644800
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AA seq
804 aa
AA seq
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MTTSNPGGRKPAICRFFVSSGNCVYGDDCQFLHQNPGMGFQKPFSNGPVGPIHSSENQGL
PDSLGNNGDQYFNATFGGESTVPEFNPFSRPPMGRPGRSMIGPTHGPNFGHNNPRMDLAS
GEGRLDCPPGGQMRMDNFRSDNTRMDHGLASDFAALNLQIPNSTKGPNPIANEFIPKSST
LSHSASSPNFTTINGNGYAPPHSNGPPPPIMMSGQSENHSMVAGVPPNSMMMSNTPPPHL
VPASKTTSGVSLATTSPSHSPHLSPSNSPLMMRRTASPIAPLKQTTTPKKSNNTTIQENV
GGTTYFYSPDDFNPQHEATQLPNFSMFPSLPPHIAHLTVKKNMPQFFMPDELKMDILNKH
ALTMAQLDTTQTTDIPAEVDNYHNLFPLEPPLANPMQKSNTFGYPTTCYKAVNTKDGLTY
CLRRVHGFRLSNTKCMSIIDMWKKMYHPNIVQLREVFTTKAFGDNSIVFVYDFFPGAETV
LLKHFSGPGGMNGFNNSFNMEGGGGGGSRSYNSGNKGLNGPRQHAGLLPESMIWAYVVQL
SSALRAIHAAGLAFRTMDPSKILIYSKSRIRLNCVGILDVLTFDSQGNPLAAIQHYQQDD
LMYLGKVVLALACNTVMAIKRDNFQNSMELIARSYSADLKNFFLYLLTNQSRPRSINDIM
PMIGARFYTQLDSAQLRSDVIENELTKEVENGRLFRLLAKLGTINERPEYNLDMQWSETG
DRYMLKLFRDYLFHQVDQNGAPWIDMAHIVQCLNKLDSGSPEKICLTSRDEQSVLVVSYA
ELKQNFERAFSELLSSGQSHASYT
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgacaacatcgaatccaggcggaaggaagccggcaatatgccgtttcttcgttagtagc
ggaaattgtgtttacggggatgattgtcagtttcttcaccaaaaccctggaatggggttt
caaaaaccattttccaacggaccagttggaccgattcattcttcggaaaatcagggtctg
cctgattctcttggaaataatggagaccagtacttcaatgcgacgttcgggggagagagt
actgtcccagagttcaaccctttctctagacctcctatgggacgcccagggaggagtatg
ataggtcctacccatggaccaaactttggtcataataacccccgcatggacttggcctca
ggggaagggaggctagactgtcccccagggggtcaaatgaggatggataattttaggtcg
gataatactagaatggatcatggattagcatcagactttgcagctttaaatctgcagatt
cccaactccacaaagggaccaaaccctattgccaatgagttcatccccaagtcctccact
cttagtcacagtgctagttctccaaacttcaccaccattaacgggaatgggtacgccccg
ccccattctaacggtcccccaccccccatcatgatgtcgggacagtccgagaaccacagc
atggttgccggggtgccaccaaacagtatgatgatgtctaacacccctccaccacactta
gtgcctgccagtaagactaccagtggcgtcagcctggccaccaccagtccgagtcacagt
cctcacttgtctccctccaactcccccctgatgatgcgcagaaccgcctcccccattgcc
cccctcaagcaaaccaccacccccaagaaatcaaacaacaccaccattcaggagaatgtc
ggtggcaccacttatttttattcccccgatgactttaaccctcagcacgaggccactcaa
ctgccaaatttctccatgtttccaagtctgccaccccacattgcacatcttactgtcaag
aaaaacatgccacagttctttatgccagatgaactcaaaatggacatattgaacaaacat
gctttaacgatggcacagcttgacacaactcaaaccacagacatcccagccgaggtggac
aattatcacaacctgttcccgttggaacctccgcttgccaaccccatgcagaaatccaac
acctttgggtaccccacaacctgttataaagcggtcaacaccaaagacggcctgacatac
tgtttacgcagagttcacggtttccgattgtccaacaccaaatgtatgagcatcatagat
atgtggaagaagatgtaccaccccaacattgtacagctgagggaggtgtttacaaccaaa
gcttttggagacaactccatagtgtttgtgtacgactttttcccgggagctgagaccgtg
ctgctgaagcacttcagtggacccggcgggatgaacggttttaacaactccttcaacatg
gaagggggcgggggaggagggtcaaggtcctataattcgggaaacaaaggtctgaatgga
cctagacagcatgcaggcttactgcctgagagtatgatctgggcatacgtggtccagctg
agctccgctctgagggccattcatgctgctggactagcctttagaaccatggaccccagc
aaaatcctcatctacagcaaatcaaggattcgattgaactgtgtgggcatactagatgtg
ttgacctttgatagtcagggtaatccactcgcagccatccagcactatcagcaagatgac
ttgatgtacctgggtaaagtagtattggccttggcttgtaacaccgtcatggccatcaag
agagacaactttcaaaactcgatggagcttatcgccagaagttactcagctgacctgaaa
aacttcttcctgtacttgctgaccaatcagagtcgcccacgcagcatcaatgacatcatg
cctatgattggagctcgattttatactcagctcgactcggctcaactcaggagtgatgtc
atcgaaaacgaattgaccaaggaagtagaaaatggacgcttattccgtcttctagcaaaa
ctgggaaccatcaatgagaggcctgagtacaacctggacatgcagtggtcggagacgggt
gaccgctacatgctgaagctgttcagggactacctgttccaccaggtggatcagaacggt
gcaccctggatcgacatggcccacatcgttcagtgcctcaacaagctggactcgggatcc
ccggaaaagatttgtctgacctctcgcgacgagcagagtgtgttagtggtctcttacgct
gaactcaagcagaactttgagcgagcctttagtgagttgctctcgtctggccagagccac
gcctcttacacgtag
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