Crassostrea virginica (eastern oyster): 111125811
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Entry
111125811 CDS
T09197
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
Organism
cvn
Crassostrea virginica (eastern oyster)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Endostatin
Collagen_trimer
Laminin_G_3
DUF1554
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
111125811
NCBI-ProteinID:
XP_022325672
UniProt:
A0A8B8DC43
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Position
3:54369927..54399686
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AA seq
1284 aa
AA seq
DB search
MWHGNILGLVLTQTFFLLTPVRGQFESDANIDLLGAIGVPGAKRGISYASGIDGFPAFEF
KEDAHIKEPAQAFFKKEIYKDFAIGITVKPYKRTGGFLFAVKNLYNTLVQFGVELTENQL
KLYYTPNVRFASSSNILASFDIGDIYNKWTRLSIKVKDNEVTLYKNCAKVGASTITGSTG
PLEVEPGANMYVGQGGENFNNMFTGAIQELKVYADPAEAENFDCDDQLTESGSSSGDTEG
PNPTLIPPITPPPPRFSKGEKGERGEHGFKGDKGDQGLPGEATGPADAGAKGERGDKGEP
GPKGDRGEPGVDGAQGPTGEVGLPGQQGIQGLQGEPGTPGLPGNPGIGMQGPKGDPGAPA
VINMKEIEDFIQTRIPGSGSNGEKGEKGDQGEKGDTGARGDTGLPGINGADGLIGPVGPT
GLKGEPGESIQGPAGPAGEDGVPGLPGAKGERGERGLQGIQGLPGPPGLTVEGSGDGEKI
AGEPGTPGLPGEKGERGETGPQGPKGEPGTFDMDINDLIGPAGPPGQAGEPGLPGMPGAA
GLQGQQGLQGPEGPKGETGNPGLPGMDGQQGLVGLPGPSGDPGPRGLPGAQGTPGVPGLP
GPPGPPGTCSSSARRGDTGITGLGDDDDLDFSGDGGCGGGDCTCVGTPGRDGINGTEGPR
GLTGSPGARGEKGEMGVQGPEGKQGPIGPPGRDGKQGEIGRAGPQGPQGETGAMGSPGLP
GVAGEPGLPGIQGLKGQKGERGEGIDGKDGKDGAQGPQGPPGPPGPPGPAHSIVDPGSGG
GEAVEGLPGPKGDQGEPGLVGAPGVPGLPGANGEKGDTGEKGDRGDIGQQGIQGDKGPKG
DTGAVGPPGPPGEVTGSGVATGVKGEPGEPGLPGEPGVPGPIGPRGLPGRKGDIGMPGLP
GLRGFRGKKGDRGFGPPGFKGEMGPPGPPGPPGTGLGPSGEIIRGAKGDRGERGLPGIPG
KGERGYPGLPGIQGEKGDKGDPGKKGEPSTVQGPPGPPGPPGYVQGGNGNGGGLVTFKDF
SNMMYAARNIPIGTMTFTLKEEEVYVRVTDGFKQIQGRTFRLSSNVIKLPSEKPTDTTTA
TSSTSTSPATTPKPVPLPGPDSVMQADQPRLYMYALNNPKTGKLRGLTGADYACYKEAYY
SGMHGRTFRAFLASKTQNLYSIVSDRNIPIVNKNDTIIFSSFNDLLRTGGRFNRNVKIYT
FDGEDVMSSSKWPEKMVWHGADSQGNKMNDKECSDWRSDSASNVGYAGSLTSGKLVDMHE
FSCRKELIVLCIEVLPKTQRKPYV
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atgtggcatgggaatatattagggttagttttaacccaaacattttttttacttacaccg
gtgcgaggacagtttgagtcagatgcaaacatagatctcctgggggctataggcgttcca
ggagccaagcgtggcatcagttatgccagtgggatagatggatttccagcatttgaattc
aaagaagatgcccacataaaggaaccagctcaagccttttttaaaaaagaaatctacaaa
gactttgccattggtataactgtaaagccttataaaagaactggtggatttttattcgca
gtgaaaaatctttataacactttggtgcagtttggtgtagaattgacagaaaaccagttg
aaattatattatactccaaatgttcgatttgcatcatcatctaatatcttggcatcattt
gacataggagatatttataacaaatggaccagattgtcaattaaagtaaaagataatgaa
gtgacgttatataaaaattgtgccaaagtaggagcttcaaccatcactgggagtactggg
ccactggaggtggagccaggggcaaatatgtatgtgggacagggaggagagaacttcaac
aacatgtttactggtgccatacaagagctgaaggtttatgcagacccagcagaagcagag
aattttgattgtgatgatcagttaactgaaagtggatcttcatctggagacaccgaagga
ccaaatccaactctgattcctccaatcactcctcctcctcctagattttcaaagggtgag
aagggtgagcgtggggaacatggatttaaaggtgacaaaggagaccagggtctgccaggg
gaggctactggacccgctgatgctggagcaaagggagaaagaggagacaaaggggagcct
gggcctaagggagacaggggtgagccaggggttgatggagcccaggggcctacaggggaa
gtgggacttccaggccaacaagggatacaaggccttcagggagaaccgggcacaccagga
cttccgggaaatccaggaattggaatgcagggccctaagggagatccaggggcacctgct
gtcattaacatgaaggagatagaagatttcattcagaccagaattcctgggtcaggctcc
aatggtgagaagggggagaagggtgaccagggagagaagggtgacactggggcccggggt
gacactggcctgccaggaataaatggggcggacggtctgattggacccgtaggtcctaca
ggactcaagggtgaacctggggagtctattcaaggtcctgctggacctgccggtgaggat
ggtgtacctggactaccaggtgcgaagggagagagaggggagcggggcttacagggtatc
caggggctcccaggacccccgggactgaccgtggagggatcaggagatggggagaagatt
gccggagagcctggaacacctggcctacctggagaaaagggagagagaggagaaacaggc
ccacagggtcctaaaggtgaacctggcacatttgatatggatattaatgatctgattggt
ccagctggaccccccggccaggccggagagccaggacttcctggcatgccaggcgcagca
ggtttgcaagggcagcaaggattacagggaccggaaggaccaaagggtgaaactggcaac
ccaggattgccaggaatggacggacaacaaggattggttggacttcccggaccctcaggt
gaccctggcccaaggggtctgccaggggcccagggtacaccaggagtgcccggtctgcct
ggccccccaggacctcccggaacatgctcctcttccgccaggcggggggatactggcatt
acaggacttggagatgatgatgacttggatttctctggagatggtggctgtggtggagga
gattgcacctgtgtagggacccctggtcgggatggaatcaatggcacagagggacccaga
ggtttgacaggatcccccggggcccgaggagagaagggtgagatgggagtccaaggtccc
gagggaaagcaggggcccatcggtcctcctggcagggacggcaaacagggtgagattgga
cgagccggaccacagggccctcagggtgagacaggtgcaatgggatctcccggcctgccc
ggtgtagcaggggaaccagggcttccaggaatacaaggactaaagggtcagaaaggagaa
agaggcgagggtattgatggtaaggatggaaaagatggtgctcaaggaccacaagggcct
cctggtcccccgggccccccagggcctgcacacagtatagttgatccagggtcagggggt
ggagaagctgtggaaggattacctggtcctaagggtgatcagggagaacctggtctggtg
ggagccccaggtgtgccaggtctgccaggtgccaacggggagaaaggtgacacaggtgag
aagggagatagaggagacataggacagcaaggtattcagggtgacaaaggaccaaaaggt
gacacaggagctgtgggccccccagggccaccaggggaggtaactggcagtggagttgca
acgggtgtaaagggtgaaccaggtgagccgggtttacctggggagccaggtgtgccagga
ccaataggacccaggggactgcctggccgcaagggagacattggaatgccaggactaccg
ggtttaagaggattcagaggaaagaaaggtgaccgtggatttggacccccaggattcaaa
ggtgaaatgggtccccctggtccccctggcccccctggaactggcctagggccgagtgga
gagatcatcagaggagccaagggagatcgtggagagagaggcttaccgggcattcctgga
aaaggagagagaggatatcctggtctacctggtatacagggagagaagggtgacaaggga
gatcctggtaagaagggtgagccgtccaccgttcagggtccccccggacccccgggaccc
ccaggatacgtccagggaggaaacggaaacggtgggggacttgttacctttaaagacttc
tccaacatgatgtatgcagccaggaacattcccataggaaccatgacatttactctgaag
gaggaggaggtgtatgtccgagtcacagatggcttcaaacagatccagggaagaacattt
aggctaagctccaatgtcatcaaacttccatcagaaaaacctacagatactactactgct
actagttccactagtacttcgccagccaccacccctaagccagtgcccctcccaggcccc
gacagtgtgatgcaggccgaccagcccaggctgtacatgtatgccctgaataaccccaag
actggtaagctccgtggattgactggagctgactatgcctgttacaaggaggcttactat
tccggaatgcatggaagaaccttccgggctttcctggcttccaagacccaaaatctgtat
tccattgtatccgacaggaacattcctatagtgaacaaaaatgatacaataatattcagc
tctttcaatgacctgttgagaacagggggcagatttaacaggaatgtcaagatctacaca
tttgatggggaggatgtcatgtcaagttctaaatggccggagaagatggtctggcatgga
gcagacagtcagggtaacaagatgaatgacaaggaatgttctgattggcggtccgatagc
gcaagcaatgtgggatatgccggttcccttaccagcggcaaattagtggatatgcacgaa
ttcagctgccggaaagagctcattgtgctctgtattgaggttttaccaaagactcagagg
aaaccttatgtttaa
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