Crassostrea virginica (eastern oyster): 111125937
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Entry
111125937 CDS
T09197
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111125937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111125937
03041 Spliceosome [BR:
cvn03041
]
111125937
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
111125937
Spliceosome [BR:
cvn03041
]
Complex B
Other components
Prp19-related factors
111125937
Complex C
111125937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_15
Mad3_BUB1_I
ARM_TT21_C
ARM_TT21
RPN7
NRDE-2
PPR
Motif
Other DBs
NCBI-GeneID:
111125937
NCBI-ProteinID:
XP_022325906
UniProt:
A0A8B8DG25
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All DBs
Position
3:complement(46129647..46140291)
Genome browser
AA seq
856 aa
AA seq
DB search
MTIEMPESGETTDKKQSDLFFEEDDLPFEEEILRNPYSVKSWLRYLEYKKQAPKSTVNLI
YERALKELPGSYKLWYNYLKLRRKKVKGRCINDPAIEDVINAHERALVFMHKMPRIWIDY
CQFLVDNSRITKTRRTFDRALRALPITQHHRIWPRYLKFVRLYDLPETAVRVYRRHLKLQ
KESTEEYIDYLMKIGWLDEAANRLVDIINDDAFVSKSGKSKHQLWNELCDLVAKNPDKVV
SLKIEPIIRQGLKRYTDQIGVLWNSMADYYIRGGHFERARDIYEEAILTVITVRDFTQVF
DAYAQFEKNLISSKMEGMEETGASEEDDLELELRLARLENLMERRPLLLNSVLLRQNPHN
VHEWHKRVKLFEGKPREIINTYTEAVQTVDPKLASGKPNTLWVEFAKFYEKAGQIEDARI
IFDKAVRVPYKHVDDLASVWCEWAEMEIRHENNEEALKLMQRATTPPSRKVSYHDETETV
QSRVHKSLKVWSLYADLEESFGTFKTCKAVYDKIIDLRIATPQIIMNYGLFLEENNYFEE
AFKAYEKGIALFRWPNVYDIWNTYLTKFMDRYGGSKLERSRDLFEQCLENCPAKFAKSFY
LLYAKLEEEHGLARHAMGVYDRATKAVLPQEQNEMFNVYIKRAAEIYGVTYTRPIYEKAI
EVLHDEQARSMCLRFADLERKLGEIDRARAIYAHASQIADPRVAANFWQVWKEFEIKHGN
EDTVREMLRIKRSVQAIYNTQVNFMSAQMLAASGGKGDNAGESMDKDNMQKLEERARQLA
EESVKDQAKPDKGILFVRSNNTQEELGELAKTANPDAIDIDDDFSSDEEAEVEEMEVKSV
PTEVFGSLKNEEEEED
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgactatcgaaatgcctgaatctggagaaaccaccgataagaaacaaagtgatttgttt
tttgaagaagatgacttaccatttgaagaagaaattcttcgtaatccatattctgttaag
tcatggctgagatatttggagtataaaaaacaggctccaaagagtacagttaatttgata
tacgagagagccctcaaagagctacccggcagttacaagttatggtacaactatttgaaa
ctgcgacgaaaaaaagtaaaaggacgatgtataaatgatcctgcaattgaagatgtaatt
aatgcacatgagagggcacttgttttcatgcacaagatgccaaggatttggattgactat
tgtcaatttctagtggacaacagtagaatcacaaagacaagaaggacctttgacagagct
ttaagagctctcccgatcactcaacatcatagaatctggccaagatatctcaagtttgta
cgattatacgatttaccagagacggcagttagagtgtacaggagacatctaaagctgcaa
aaagagagcacagaggagtatattgactacttgatgaagatcggctggctagatgaggca
gccaatagactggtagacatcatcaatgatgacgcctttgtgtcaaaaagtggaaagtcc
aaacatcagttgtggaatgagctttgtgacctggttgctaaaaatccagataaggttgtc
tcgctgaagattgagcccatcatccgacaaggactgaagcgctacacagaccagattggg
gtcctgtggaactcgatggctgactattacatcagaggaggccattttgaaagagctcga
gatatttatgaggaagccatcctgactgttatcactgtgagggatttcacgcaggtgttt
gatgcttacgctcagtttgagaagaacctgatcagttctaagatggagggaatggaggaa
acaggtgcttctgaagaagatgatctggaattggagttgagactagccaggttagaaaat
ctgatggagaggagacctcttctattgaacagtgttcttctgagacaaaatccacacaat
gttcatgagtggcacaaaagagtgaaactatttgaaggaaagccacgagagataattaac
acatacacagaagctgttcagactgttgacccaaagcttgcatcaggaaaacccaacacc
ttatgggtagagtttgccaaattctacgagaaagctggacagattgaagatgctcgaatt
atttttgacaaagcagtgagggtgccatacaagcatgtggatgatctggcgtctgtgtgg
tgtgaatgggctgagatggaaatcagacatgaaaacaatgaagaagccttgaagttaatg
caaagagctaccactccaccatcaagaaaagtctcctaccatgatgagactgaaactgtc
cagagcagagtgcacaagtccttaaaggtgtggtcactgtatgcagatttggaggagagc
tttggaacattcaagacatgcaaggcagtctatgataaaatcattgacctgcggatcgcc
acaccacagattattatgaactatggtctattcttggaagaaaacaactactttgaagag
gccttcaaggcttatgaaaaaggtatagccttgttcaggtggccgaatgtgtatgacata
tggaatacctatctcacaaagtttatggacagatatggtggctcaaagttagagagatct
cgagatttgtttgaacagtgcttagagaattgtccagcaaaatttgcaaagagtttctac
ctgctgtatgcaaaacttgaagaggagcatggcctggccaggcatgcaatgggggtgtat
gatagagccacaaaagcagtgctaccacaagagcaaaatgagatgtttaatgtgtacatc
aaacgagcagctgagatctatggagtgacatacacacgacctatttatgagaaagccatt
gaagtgctacacgacgaacaggccagatctatgtgcctgcgttttgctgatttggaaaga
aaactaggagaaattgatcgtgcccgagcaatttatgcacacgcttcacagattgccgat
ccgagggttgcagccaacttctggcaagtgtggaaggagtttgagattaagcatggcaat
gaagacacagtgagagaaatgttaagaatcaaacgctccgtacaggccatttacaacact
caggtgaacttcatgtctgctcagatgttagctgcctctggagggaaaggagacaatgct
ggtgaatctatggataaagacaacatgcagaagcttgaggagagagcgagacagctggct
gaggaatctgtcaaagaccaggccaagccagacaaaggcattctgtttgtcaggagtaac
aatacacaggaagagctgggagagctggccaaaactgccaaccctgatgccatcgatatt
gatgacgacttctccagtgatgaggaggcagaggtggaagaaatggaggttaagtcggtg
ccaaccgaggtctttgggtcacttaaaaatgaggaggaagaagaggattaa
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