Crassostrea virginica (eastern oyster): 111125967
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Entry
111125967 CDS
T09197
Name
(RefSeq) pre-mRNA-splicing factor 38B-like isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111125967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvn03041
]
111125967
Spliceosome [BR:
cvn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111125967
Complex C
U4/U6.U5 tri-SnRNP related factors
111125967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
111125967
NCBI-ProteinID:
XP_022325990
EnsemblRapid:
LOC111125967
UniProt:
A0A8B8DGB4
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Position
3:complement(52553550..52559257)
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AA seq
427 aa
AA seq
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MAPNNPLPTWGNEKTMNMNPLILTNIQASPYFKVNLYELKTYHEVIDEIYYKVDHLEPWE
KGSRKTAGQTGMCGGVRGVGAGGIVSSAYCLLYKLYTLKLTRKQLMGLITHKDSPYIRGL
GFMYIRYCIDPKEMWDWYEPYLDDEEEIDVKAGGGHKMTMGEVLRQWMVKLEWYSTLFPR
IPVPIQKDLMQKLKEHPPQAPGFGGEEEEQEEEQYQPEEREEPWRARHIPDEEVSFGEAE
RNLHQRRSPDFRRSQGRSSPKRRSRSPRRRRSRSPRRSPDRRRSRSPYRRRHSPSRRRSR
SPRNDFARELERERRRQERDRRSDRSRSRDRQKDKHRDRSRSKERPRHRSRSRSKDKMRQ
ERSIHSGSKSHRSRSGSREPKRKKEKKHKHKSRSRERNSKHKSHSKHDRESEHNSPARGD
DRIKDDL
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgaacaatcccctcccaacttgggggaacgagaagacaatgaacatgaatcct
ttgattctgacaaacattcaggcttctccatacttcaaagtcaatctgtatgaattgaaa
acataccatgaggtcattgatgaaatttactacaaggttgatcacttagagccatgggaa
aagggaagcaggaaaacggctggtcagactggaatgtgtggaggggtgagaggagttggg
gctggtggaattgtctcaagtgcatactgcctcttgtacaaactctacacgctgaaatta
acacgtaaacagctgatggggctgatcacacacaaggattctccatacatccgtggacta
ggatttatgtatatcaggtattgcattgacccgaaggagatgtgggactggtacgagccg
tatctggatgatgaggaggagattgatgtgaaggcaggtgggggccacaagatgaccatg
ggagaggtgctgcgtcagtggatggtgaagctggagtggtactccacactttttcctcgg
atccctgtccccattcagaaggacctgatgcagaagctgaaggagcatccaccgcaggcc
ccaggatttggaggggaggaggaggagcaggaagaggagcagtaccagcccgaggagcgt
gaggaaccgtggcgagccagacatatcccggacgaggaggtgtcctttggggaagctgag
agaaacctgcatcagaggagatctcctgatttcagacgttctcaaggtcgatcgtcacct
aagagaaggtcaaggtcaccaagaagacgtcggtcaagatcaccaaggaggtctccagat
cgaagaagatcaaggtcaccatatagaagaagacattcaccatccagaaggagatctcga
tctccaagaaacgactttgcccgggagcttgagagagagcgcagaagacaggaaagggat
aggagaagtgaccgctcaaggagcagagatagacagaaagacaaacacagagacaggtca
aggagcaaagagaggccaaggcatcgatcaaggtcaagaagtaaagacaagatgagacag
gaaaggtcaatacattcagggtccaagtcccaccgttcaaggtctggatcacgggaacca
aaacggaagaaggaaaaaaagcacaaacataagtctaggtctcgggaacgaaactcgaag
cataaatcacactcaaaacatgatagagagagcgagcacaactccccagcaaggggcgat
gatcgcataaaggatgatctctga
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