Crassostrea virginica (eastern oyster): 111126014 Help Entry 111126014         CDS       T09197                                  Name (RefSeq) helicase SKI2W-like   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism cvn  Crassostrea virginica (eastern oyster) Pathway cvn03018   RNA degradation Brite KEGG Orthology (KO) [BR:cvn00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     111126014  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cvn03019]     111126014 Enzymes [BR:cvn01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      111126014 Messenger RNA biogenesis [BR:cvn03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      111126014   mRNA degradation factors    3'-5' decay     Ski complex      111126014 SSDB OrthologParalogGFIT Motif Pfam:  DSHCT Ski2_N DEAD MTR4_beta-barrel MTR4-like_stalk DEXQc_Suv3 ResIII Helicase_C DUF3516 Motif Other DBs NCBI-GeneID:  111126014 NCBI-ProteinID:  XP_022326077 UniProt:  A0A8B8DD90 LinkDB All DBs Position 3:4133137..4152024 Genome browser AA seq 1236 aa AA seqDB search MDVQSLGVDFELAEVGCHGAFIPVPKRKCDGDQVIPRKTLPVGLPPILPSWDEELEKFLT CIDHVPIHDLTNAQRFWPREPHPENLYHAEVSGVQTTIQVDRNPTTGQLLGYKEEYLEST TEGRTSLSLRRPPGPASQDVRGSSANFPFLPGGMEEVDTILSKEKENFLHFEKDLLSVAP GLKEGMTFDDLDMTSRPEEPSVVSLADLMSAADLDEFNFGEEEDKKESKENDTGQGQIQG HVILEEEESLETLVKIDNESLSERAYKVTSEERREEWAIKVDIDHPVTDFHDRIPDMAYK YPFELDVFQKQAILHLENHESVFVAAHTSAGKTVVAEYAIALSLKHMTRTVYTSPIKALS NQKYREFKQTFGEVGLITGDVQINQTASCLIMTTEILRSMLYNGSDVIRDLEWVIFDEVH YINDAERGVVWEEVLIMLPQHVNIILLSATVPNTLEFADWIGRTKKKKIFVISTLKRPVP LEHHLYTGTSGKTSSELFLIVDEKKNFLTSGYNKALDAKKERSKSAQGFGPKGTRGGHPN QDKNVWISVIDMLKKKDKLPAVAFTFSKRKIDENALNLQNKDLTTASEKSEIHIFFRTAI KKLKPPDQKLPQVLQMETLLQNGIGVHHSGILPILKEVVEMLFQRALVKILFATETFAMG VNMPARTVVFDSIRKHDGTCFRDLLPGEYIQMAGRAGRRGLDSTGTVIIMCKGDVPEMSD LHKMMLGKPTKLESQFRLTYSMILNLLRVEQLRVEDMMKRSFSEFHQQKDVHKHKVTLDQ LHSQVSRIRPIECYLCSVDLEKYYDTCRDYQCLKSKLQEVVLSHPAAIKALTAGRVIVIS NSFHSNQLGIVLTSTMAANNERVFTCLVLCDKNKSVKVQSEERQEEAEVTPVTDRDLYLP AAPCGHDLIQVKAKDVSTVTVKSIRVEATKIIDDIKKRQMTRFKDDPPGKSVTAASQELS RLIESNIHGLPGLDPVKDLHLRDIDLVEQFRSLQLIEESFGSYQCINCPHFSDHFEEHKR NTKLKDEHKRLKFLLSDESLSLLPEYQQRVQVLKHLNYIDENNAVQLKGRVACEISNHEI MITELVFENVLTELHPTEIAALLSCVVFEQKNCSEPKLAPELVKGKESILSIARQISGLQ RQYGMNLVGDYEDEFKFGLMEVVFEWARGLPFAEITGLTDVQEGIIVRCIQRLHETLRDV RNAARIIGDPVLYRKMEEASLMIKRDIVFAASLYTQ NT seq 3711 nt NT seq  +upstreamnt  +downstreamnt atggatgtgcagagtctgggagtggactttgagttggcagaggttggttgtcacggagcc tttataccagtgcccaaaaggaaatgtgatggagatcaagtgattccaagaaaaacacta cctgtcggtctgccaccaatcttaccttcatgggatgaagagcttgagaaattcttgaca tgtattgatcacgtgcctattcatgatctcaccaatgcacaaaggttctggccgagagaa ccccacccagagaatctatatcatgctgaggtgtcgggggttcaaaccacaatccaggtg gataggaaccccaccactgggcagctgctcggctataaggaggaatacctggagagcacc acggaggggaggacctccctgtccctcaggagacccccggggcccgccagtcaggatgtc agggggagcagcgccaacttcccattccttcccggtggtatggaagaagtggacaccata ctatccaaagaaaaagaaaactttctacattttgaaaaagacttattgtcagtggcacct ggtttgaaagagggcatgacctttgatgaccttgacatgacctcaaggccagaagaacca agtgttgtgagtctggctgaccttatgtctgcagcggatcttgatgaatttaattttggg gaggaagaggataaaaaagagtccaaagaaaatgacacaggtcaaggtcaaatccaaggt catgtcattttggaagaagaggagagcttagaaacccttgtaaaaattgataatgagagt ttgagtgagagagcttacaaggtgacctcagaggagaggagagaggagtgggccattaag gtggacatcgaccatcctgtgacggacttccacgacaggataccggacatggcatacaag tatccgtttgagttggatgtgttccagaaacaggccattctccacctcgagaaccacgag agtgtgtttgtggcggctcacacctcagcaggaaaaactgtggtagccgagtacgccata gccctctctctgaaacacatgaccaggactgtgtacacctcccctatcaaggcattgtcc aatcagaaataccgagagttcaagcagacgtttggagaggtgggactaattacaggagac gtccaaatcaaccagactgcctcctgcctgatcatgaccacagaaatcctcaggtcgatg ttgtacaatggttcggacgtaatacgagacctggagtgggtgatctttgatgaggttcat tacatcaatgatgctgagagaggagttgtgtgggaggaggtgttgattatgttgccgcag cacgtcaatatcatcctgctgagtgcgactgtaccaaacacactggagtttgcagactgg atcgggaggacgaagaagaagaagatctttgtgatcagcaccctgaagcgcccggtgccc ctggagcatcacctgtacactggcactagtggcaagaccagcagcgaactcttcctcatc gtggacgaaaagaagaacttcctcaccagcggatataataaagcacttgacgcaaagaaa gaacgcagcaagtcagctcaaggatttggacccaaaggaacaaggggaggtcacccaaat caggacaagaacgtctggatctcggtgattgacatgttgaagaagaaggacaaactacca gctgtggccttcaccttctccaagaggaagatcgacgagaacgcgctcaatctacagaac aaagacctgaccacggctagcgagaagagcgagatccacatcttcttccggacggccatc aagaagctcaaaccaccggaccagaagctgccacaggtgctacaaatggagaccctgcta cagaacggtataggtgtacaccacagtggcatactgcccatactgaaggaggtggtggag atgctgttccagagggccctagtcaagattctgtttgccacggagacttttgctatgggt gttaacatgccggccaggaccgtggtgtttgacagcatcaggaagcatgatgggacgtgt ttccgtgacctgctccccggggagtacatccagatggccgggcgcgcgggcaggagggga ctggactccaccgggaccgtcatcattatgtgcaagggggacgtaccagaaatgtcagac ctccacaaaatgatgctgggaaagcccaccaagttggagtctcagttccggttgacctac tcgatgatcctgaacctgttgagggtggagcagctgagggtggaggacatgatgaagcgg agcttctccgagttccaccagcagaaggacgtccacaaacacaaggtcaccctcgaccag ctccactcccaggtatcccggatccgccccatcgagtgctacctgtgctccgtcgacctg gagaaatactacgacacctgcagagattaccagtgccttaagagtaaattacaggaggtt gtattgtctcatccagcagccattaaagctctgacagcaggaagagttattgtcattagc aacagtttccatagcaaccaactaggcattgtactgacttctaccatggctgctaataat gagagagtgttcacctgtcttgttctgtgtgataaaaataaatcagtgaaagtacagtct gaggagagacaggaggaggccgaggtcacgccggtgacagaccgagacctctacctcccg gcggccccgtgtggccatgacctcatacaggtcaaggccaaagatgtcagcaccgtgact gtcaagagtatacgagtggaggccaccaagatcatcgacgacatcaagaaacggcagatg actagattcaaagatgacccaccaggaaaatcggtcactgctgcgtcacaggagttgtca cgcctgatcgagtccaacattcacggtctgccgggactggacccagtcaaggaccttcac ctccgagacattgaccttgtggaacagttccggtcactacagctgatcgaggaaagcttt gggagttaccagtgtatcaactgcccccacttctcagatcattttgaagaacataaacgc aacacgaagctgaaggatgaacacaagcggctgaagttcctgctatcagatgagagtctg tccctactaccagagtaccaacagagagtacaggttttaaaacacctgaattacattgat gaaaacaatgcggtacagttgaaaggtcgtgttgcctgtgagatcagcaaccatgagata atgatcacggagctggtgtttgagaatgttttgactgagctccatccgaccgagatcgca gctcttctctcctgtgttgtgtttgaacagaagaattgtagtgagcccaagctggccccg gaactcgtcaaaggaaaagagtccatattgtcgatcgctcggcagataagcggactccaa agacagtatggtatgaacctagtgggggactacgaggacgagttcaagttcggcctgatg gaggtcgtgtttgaatgggcgcggggcttgccttttgcggagatcacgggtctgaccgac gtccaggaggggatcatcgtgcggtgtatacagcgactccacgagaccctgcgagacgtc cgcaatgcggctcgaatcatcggagaccccgtcctgtatcgcaagatggaggaagcctcg ctgatgatcaaacgagacatcgtgtttgcagcttcactctacacgcaataa

DBGET integrated database retrieval system