Crassostrea virginica (eastern oyster): 111126186
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Entry
111126186 CDS
T09197
Name
(RefSeq) putative ATP-dependent RNA helicase me31b
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111126186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111126186
03036 Chromosome and associated proteins [BR:
cvn03036
]
111126186
Enzymes [BR:
cvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111126186
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
111126186
mRNA degradation factors
5'-3' decay
Decapping complex
111126186
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Gene silencing
piRNA pathway
111126186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
111126186
NCBI-ProteinID:
XP_022326349
UniProt:
A0A8B8DFL9
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All DBs
Position
3:51378104..51388509
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AA seq
447 aa
AA seq
DB search
MASATVEQNSGNHANSSDAKAGDSTGWKSKLNLPPKDLRVKTSDVTNTKGNEFEDFCLKR
ELLMGIFEKGWEKPSPIQEASIPIALTGRDVLARAKNGTGKTGAYTIPILEKADPSRDEV
QSLVIVPTRELALQTSQICIEISKHLGLKVMVTTGGTNLKDDIMRLYDPVHVIIATPGRI
LDLMNKNLVKIGKCGMLVLDEADKLLSQDFKGMLDHIIAHLPHDRQILLYSATFPLTVEQ
FMRKHLNNPYEINLMDELTLKGVTQYYAFVQEKQKVHCLNTLFSKLQINQSIIFCNSTQR
VELLAKKITELGYSCFYIHAKMNQQHRNRVFHDFRQGLCRNLVCSDLFTRGIDIQAVNVV
INFDFPKHAETYLHRIGRSGRFGHLGVAINLITYDDRFSLHKIESELGTEIKPIPKNIDK
SLYVAEFHMMNDHEEEGDPHSQQKGGH
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggcttcggctactgttgagcaaaattctggtaaccatgccaattcttcagatgctaaa
gctggagattccacaggatggaaatctaagctgaatcttccaccaaaagaccttagagtg
aaaaccagtgatgtgacaaacaccaaaggtaatgagtttgaggacttttgtttgaagcga
gagcttctaatggggatctttgaaaagggatgggaaaagccttcccccattcaggaggcg
agcattcctattgctctaacgggaagagatgttctagcaagagccaaaaatggcacagga
aagacaggagcctacacgattccaattctggaaaaggcagacccaagcagagatgaagtt
cagtctctagtgattgtgccaactcgtgagttagccctccaaaccagccaaatctgcatt
gagatcagtaaacatttgggactgaaggttatggtgacaacaggaggaacaaatcttaag
gatgacatcatgaggctctatgatccagtgcatgtgatcattgcaactcccggtagaata
ttggacctgatgaacaagaatctagtcaagattggtaaatgtggcatgcttgttctggat
gaggctgacaagttgctgtctcaagattttaaggggatgctggatcacataatcgcccat
ctgcctcacgatcgacaaattctcctctactcagccacctttcccttgacagttgaacaa
tttatgagaaagcatttgaataacccatatgagatcaacttgatggatgaattgactctc
aagggagtgacacagtattatgccttcgtgcaggaaaaacaaaaggtccactgtctcaat
actcttttctcaaagttgcaaatcaaccagtccatcatcttctgcaactcgactcaacga
gtggagctgcttgccaagaagatcactgagcttggttactcatgtttctacatccacgcc
aagatgaaccaacagcacagaaaccgagtgttccatgacttcaggcagggtctctgtagg
aaccttgtgtgttcagatctgtttaccagaggaattgatatccaggcagtaaatgttgtc
atcaattttgacttccccaaacatgctgagacctatctccacagaattggacgatcgggc
agatttggacacttgggtgtggcaatcaatctcattacctatgacgacaggttttctttg
cacaaaatagaaagtgaattaggaacggaaatcaagcccattccaaagaacatagacaaa
tctctgtacgtggcagagttccacatgatgaatgaccacgaagaagagggggaccctcat
tcacagcaaaaagggggacactaa
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