KEGG   Crassostrea virginica (eastern oyster): 111126226
Entry
111126226         CDS       T09197                                 
Name
(RefSeq) high mobility group-T protein-like
  KO
K10802  high mobility group protein B1
Organism
cvn  Crassostrea virginica (eastern oyster)
Pathway
cvn03410  Base excision repair
cvn04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:cvn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    111126226
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    111126226
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cvn03036]
    111126226
   03400 DNA repair and recombination proteins [BR:cvn03400]
    111126226
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cvn04147]
    111126226
Chromosome and associated proteins [BR:cvn03036]
 Eukaryotic type
  Nucleosome assembly factors
   HMG (high mobility group) proteins
    111126226
DNA repair and recombination proteins [BR:cvn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     111126226
   MMR (mismatch excision repair)
    Other MMR factors
     111126226
Exosome [BR:cvn04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   111126226
SSDB
Motif
Pfam: HMG_box_2 HMG_box HMG_WDHD1 HMG_box_5 DUF3245
Other DBs
NCBI-GeneID: 111126226
NCBI-ProteinID: XP_022326420
UniProt: A0A8B8DD01
LinkDB
Position
3:71364970..71367397
AA seq 202 aa
MGRKDGKPRGRMSSYAFFVQTCREEHKKKCPDENVVFAEFTKKCAQKWKEMSAKEKRRFE
EMAERDKSRYEKEMANYDPPAGGSAGKRKKRAKDPSAPKRALSAFFFFCGDERPEVRAAH
PEWSVAEVAKELGKRWEKVTNKSKFEARAEADKARYAKEMEAYRGGGAVPKGNSPAKKAK
APPKESDEDEDDDDDDDEDDDE
NT seq 609 nt   +upstreamnt  +downstreamnt
atggggaggaaagatggaaaaccaaggggacgtatgtcatcatatgcattctttgtgcaa
acctgtcgcgaagagcacaagaaaaagtgtccagatgaaaatgtcgtctttgccgagttc
accaaaaaatgtgcccagaaatggaaagaaatgagtgccaaggaaaagaggaggtttgag
gagatggctgagagagacaaatctaggtatgagaaagagatggccaactacgaccctcca
gcgggtggctctgccggcaagaggaagaagagagccaaggaccccagcgcaccaaagagg
gccctgtctgcctttttcttcttctgtggtgatgaacgtccagaggtacgggcagcacac
ccagaatggtcagtcgcagaggttgcaaaggaactgggaaaaagatgggagaaagtaacc
aacaaatccaaattcgaagccagggcagaggctgacaaagccagatacgccaaggaaatg
gaggcttacaggggtggtggagctgttcctaaagggaattctccagccaagaaagctaag
gctccacccaaggaaagcgatgaggatgaggatgatgatgacgacgatgatgaggatgat
gacgagtag

DBGET integrated database retrieval system