Crassostrea virginica (eastern oyster): 111126227
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Entry
111126227 CDS
T09197
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111126227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvn03021
]
111126227
03036 Chromosome and associated proteins [BR:
cvn03036
]
111126227
Transcription machinery [BR:
cvn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
111126227
Coactivators
SAGA/TFTC/STAGA complex
111126227
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
111126227
STAGA complex
111126227
TFTC complex
111126227
SAGA complex
111126227
SLIK complex
111126227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WDR55
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT122_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_Aladin
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_VPS8
Beta-prop_SPT8
Beta-prop_Vps41
Tricorn_2nd
Beta-prop_WDR75_2nd
Beta-prop_HPS5
WD_LRWD1
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
eIF2A
Beta-prop_ACSF4
VPS8_N
WD40_like
Motif
Other DBs
NCBI-GeneID:
111126227
NCBI-ProteinID:
XP_022326421
UniProt:
A0A8B8DHH7
LinkDB
All DBs
Position
3:complement(6685983..6707220)
Genome browser
AA seq
688 aa
AA seq
DB search
MAGNEVPFSDSLKTQGNMQQTLPLQNATKADVSDKQTLLAVLQFLKKNNLKGTEELLKRE
ASIKDDDVRPPTSSQSETDVSHALAAYKSADDPSRFADYYTNLKTFIESCLDAHKVELSV
ILYPVFIHMYLEMVYNEHESYAISFFRRFSKEQEDFYQEDLQRLATVTKKEHMKGNELME
SFKASKFVIKMSRDSYNHLKRYLQENKMKPLLTIIQEHLFIDVFDGVPRTKQQIDATSGG
LMGESERDANKVKVFYGLLKEPDINMPLEEEDEAPEGDDKPKKKKPKKDPLMMKKSKNDP
HAPAFNRIPLPEMKDQDKMEKITAYREALKRVKVNRENLPTICFYTVLNSYQGVTSIDMA
EDSSLLSVGFADSTIRVFTTSCQKLRGMKTAGELDSIDRDADDVLERMMDDRTAADSKLL
TGHSGPVYAARFSRDRKYLVSCSEDGTVRLWSLLTWTNLVCYKGHNHPVWDVEFSPYGHY
FVSVGHDRTARLWATDHHVPIRIFSGHLSDMDCVKFHPNSNYIATGSNDRFIRLWDILNG
NCVRIFSGHKGSVQTLCFSPDGRFLASSGVDSIVLLWDISTGGLMAQMKGHTDTVYSLCF
SRDGGVLASGGLDNSVKLWDVVKVLQEVDTDADTSIPSSVHVNDSAGLLIGSWATKATPV
LCIHFTRKNLMIASGPAALQEDKSPHKT
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcaatgaagttccgttttcggattctctgaaaactcaggggaatatgcagcag
acactgcccctccagaatgctactaaagcagatgtgtccgacaaacaaacacttttggca
gttttacagttcttaaagaaaaataacttaaagggaacagaggaattactcaagagagaa
gcttccatcaaagatgacgacgtgcggccaccaacctcttcacagtcagaaactgatgtt
tctcatgctttggctgcatacaaaagtgctgatgatccaagtcggtttgcagattattac
acaaatctgaagacgtttattgagtcctgtttagatgcacataaggtggaactctctgtt
attctgtatccagtgtttatacacatgtacttggagatggtttacaacgaacatgaatcc
tatgcaatatcattcttccggagattctccaaagaacaggaagacttctatcaggaagat
ttacagagactggcaaccgtaaccaagaaagagcatatgaaaggcaacgaactcatggaa
agcttcaaagccagtaagtttgtgatcaagatgtcacgagactcatacaaccatctaaag
agatatctccaggaaaacaaaatgaagcccctgttgacaatcatacaggaacatctcttc
attgatgtgtttgatggagttccacgaaccaagcaacagattgacgcgacaagcggtgga
ctgatgggagagagcgagagagatgctaacaaagtgaaggtgttctacggcctgctgaag
gagccggatatcaacatgccccttgaggaagaggatgaggccccagagggggacgacaaa
cccaagaaaaagaagccaaagaaagatcccttgatgatgaagaaatctaaaaacgatcct
catgccccagcgtttaaccgaattccccttcctgaaatgaaagaccaggataagatggag
aaaatcacagcttaccgagaagccttaaaacgagtgaaggtcaacagggaaaacctcccg
accatttgtttctacactgtcctcaactcataccaaggggtgacctccatcgacatggcc
gaggactccagtctcctctctgtcggatttgcggattccaccattcgagtcttcaccacg
tcctgtcaaaaactccgtggaatgaagactgctggggaattggacagcattgatagagac
gcagatgatgtactggagaggatgatggacgaccggacagctgccgacagtaagctgctg
accggacacagcgggccggtgtacgccgctcgcttcagccgcgacaggaagtacctcgtg
tcctgttcagaggacggaacagtgagactgtggagcttgctcacctggacaaacctcgtt
tgttacaagggacacaatcaccctgtctgggatgtggaattcagtccctacggtcactac
tttgtgtcagtcggacacgaccggacagccagactctgggccacggaccaccacgtcccc
atcaggatcttctctggacacctctcagacatggactgtgtcaagtttcatcccaactct
aactacattgccactggatccaacgatcgcttcatccgactttgggacatcctcaacggc
aactgtgtgcgcatcttctcaggacacaaggggtcagtgcaaacactctgtttttcacct
gatggaagatttctggcatcctcaggggtggacagcattgtcttactctgggatatctcc
accggaggcttgatggctcagatgaaaggacacacggacaccgtgtatagcctgtgtttc
agccgagacgggggagtcctggcatccgggggtctggacaatagcgtcaagctgtgggac
gtggtcaaggtgttacaggaagtagacacggacgctgacaccagcattcccagctctgtc
cacgtgaatgacagtgcaggtctcctgatcggatcctgggcaacaaaagccacgcctgtt
ctctgcattcacttcacgcggaagaatctgatgatagccagtggaccggccgccttacag
gaggacaagtccccccacaaaacgtga
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