Crassostrea virginica (eastern oyster): 111126885
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Entry
111126885 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111126885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvn03041
]
111126885
Enzymes [BR:
cvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111126885
Spliceosome [BR:
cvn03041
]
Complex C
Other components
Step II factors
111126885
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KH_DEAH11
Helicase_C
DEAD
IBR
RRM_1
IBR_1
KH_DEAH11_2nd
OB_NTP_bind
AAA_22
IBR_2
AAA_19
Rcat_RNF216
RRM_Nup35
WHD_HA2
nSTAND_NTPase5
AAA_25
NAT10_TcmA_helicase
AAA_30
KH_DEAH11_1st
RRM_DEAH11
Motif
Other DBs
NCBI-GeneID:
111126885
NCBI-ProteinID:
XP_022327509
UniProt:
A0A8B8DIT7
LinkDB
All DBs
Position
3:complement(31242635..31248448)
Genome browser
AA seq
1671 aa
AA seq
DB search
MEREHTDEETNQKDSDGNRQSTEGFPLVDEPENDLDETDTLEKAIVETEEKQSELLERKE
NSSRNIPKSRRGIQRETLELKKDKSDKNQKQSFQDRPQEGSVSKEEYKIDIKTLQHIQTE
AEESLRSHQEKKSDTERKISALSSKDDKSTQKHKEAEKEALTAKLEELNQQQGEFQMCLS
KIINDVELRIGKSIDQEEFNALMNRFEVESTRLRQALPIYAKRSQIMDTILQSQVSIILG
ETGSGKSTQITQYILESSLSSAGKXVCTQPXKVAAVSLAERVASELNSKVGELVGYQVGM
KSMLSKNTKVLYMTDHMLLNECLKDPLLKDFSCVVIDEAHERSVYTDLLLGMIKKCLSQR
RDLRVVVTSATIDPDVFVKYFGGPELCPVLKVSGRMFPVEIDWLNVSAGTEVVDDYETKA
IETAADIHRTEPPGDILIFLTSQIEIEQCRGKLHALLQMKKDFLILPLHGKLQADEQNLV
FQVTPEGKRKIVLATNVAETSVTIPGIKYVVDTGAVKELSYDSSKKVSSLRVVKVTQSSA
NQRKGRAGRTGPGKCYRLYSQKDYEIMCPTSIPEIQKIHLSHAILKLLQLNVDPLDFDFV
EAPERISMDNAFQHLSGLGAIKKGKITPLGKWIAKLPFEPNLGVFVHDSIDSNVGVEGII
IAASCTVSGSLFYRSGTKEQKEIADKLKVQFCHKRGDLFTNLCVFKEWYKVDEKRKGKWC
IDNSINGKALRIIRDSAKEIMHTLKKDLDIRIEFKFSESVDMERVLQKLLFKSFQNNLCH
FLGHEKAGYHFIDKNQQVILHPSSALQSLASFPEWVIVENILQTSMDYALNVTAVADEDI
LDALDNRSLKFDFKDVTERKVTQVVTEYVGIQGHKEFVGPRFCKVRAMQEQLLKQHKDAV
FVIDADRDKGEISIFAPIRDKNIYLQTLKSALDPIREKIRSETAEHPVIPEIQSVRIVIG
AGGQIQDVLYHDEFKNVFIFGENPGSNDRIKEWFGQYGSISSFIPKSQKSRNPKYIGQIT
YENSESARKAVNATEKGQCDYTASPPKVKAKSDGGDLLRARLTWCRRKSRGFGFVEILDE
NKIDMIILSCSSKKVNAGGKYMKIKRKQNERQDEKKNELYVSGLGESVNEDVLRECFLNN
FDVSEEDIGKVAIVREKKDTRPEMLQSLKSQLEDAFSNNIERDMFSVSVMEPKPADFTYQ
ASITCKDPEKGLEVCSSMQHNLFIEGHSVSITPEMNTRLSVLTPVYQRIEKEIERYCEKI
RNETRGRRATVRRLKNEKYVIDISTDSIESLVDTRNEIQRMLEGEKVNVDRIPDLPHLFT
RDGQEKVRRVMQKTNTTILLDHRNISVSIHGKTEERVLALEKIKRYVEKLSSSKVRLYDL
KGESKPPGLMKAVILKHGKDLQGLKDLSALTAIELDLRNHRIKMLGSDDAVAKAVEEIDE
MATQVPGKCSISITSNEPECAICLCVIPETEMYRLESCGHPYCKDCVKLNLESTMQRREF
PLKCCHDVCQMLWAWKDFIYMTNIGFCSLQNIIDSSISSHVRENKDKVKYCITPDCPMVY
KVTENGGRIVCDKCKTGMCSSCHVEYHDGLLCYQYKLSKGNVNYNNECWIQEWMRQDPIN
RKQCPRCFTGIEKNGGCQHMTCQACTIHICWTCMETFNSGTECYEHMGTKH
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atggaacgggaacatactgatgaagaaactaatcaaaaagattcagatgggaaccgtcag
tcaacggaaggtttcccattagtagatgaacctgaaaatgatttagatgaaacagacaca
ttggaaaaggccatagtggaaacagaggaaaagcaatctgaattgttagaaagaaaagaa
aattcatcacgaaacatcccaaaatcaaggagaggtatccagagggaaacattagaactg
aaaaaagacaaaagtgacaagaatcaaaaacagtcatttcaagaccgccctcaagaggga
agtgtatccaaagaggaatataaaattgacattaaaacattacagcacatacaaacagaa
gcagaggaaagtttaagatcacaccaagaaaagaaatcagatactgaaagaaaaatttct
gcacttagctccaaggacgataaatctactcagaagcataaagaagcggagaaggaagct
ttaactgccaagctagaagaactaaaccagcaacagggggaattccaaatgtgtttgtct
aaaatcattaatgatgttgagttacgcattggtaaaagcatcgatcaagaagaatttaat
gctctaatgaatagatttgaagtagagtccacacgactaagacaggcattgccaatctat
gccaaacgatcacaaattatggacactatactccagagccaagtttcaatcatattaggc
gaaactgggtcaggaaaaagcactcaaataactcagtacattctggaatctagcttaagc
tcagctggaaaantcgtgtgcactcaaccanagaaggtagcagcagtaagtctcgctgaa
cgagtggcatcagaattaaactcaaaagtaggcgaactcgttggatatcaggtaggaatg
aaatctatgctcagcaagaacactaaggtgttatacatgacagaccatatgcttcttaat
gaatgtttaaaagatcctctgctgaaggatttctcctgtgttgtaattgacgaagctcat
gaaagaagtgtttatacagatcttctacttggtatgattaaaaagtgtttgtcacaacgg
cgagaccttcgtgttgtagttacctctgcaaccattgatccagatgtatttgtaaagtat
tttggcggaccagagttgtgccctgtgttaaaagtttcaggacggatgtttcctgttgaa
atagattggctaaatgtttctgctgggaccgaggttgtcgatgattatgaaacaaaagct
atcgaaacagctgccgacattcaccgtacagaaccaccaggagatattttgatttttcta
acatcccaaattgaaattgaacagtgtagaggaaaactccacgcacttcttcaaatgaaa
aaggattttttgatattacctttacacggaaaactacaagctgatgaacagaatttagtc
tttcaagttactccagaaggaaagcgaaaaattgttctggctactaatgtagcagaaaca
tcagtaactattccagggataaagtatgttgtcgataccggagccgtcaaagaattatca
tatgattccagtaaaaaggttagttcgttgcgagttgtaaaggttacccaaagctcagct
aaccaaaggaaaggtagagcaggaagaactggacctggaaaatgctacagactctactcg
cagaaagattatgaaataatgtgtcctacctctatcccagaaatccaaaaaatacatctg
agccatgcaatcttaaaactcttacaactgaatgtggaccctctagactttgactttgta
gaagctccagaaagaatatcaatggacaatgcttttcaacacctcagtggcctcggggca
ataaaaaaaggaaaaattactccactgggtaaatggattgcaaagcttccatttgagccg
aatttgggagtttttgttcatgactctattgacagcaatgttggagttgaaggaataatc
attgcagcttcctgcacggtatctggatctttgttttaccggagcggtacaaaagaacaa
aaggaaatagctgacaaattaaaggtccaattttgtcataagcgtggtgatctatttaca
aatctttgtgtttttaaagaatggtacaaagtagatgaaaaacggaaaggaaagtggtgc
atagataattccatcaatggaaaagctttgcgaatcattagagatagtgcaaaagaaatt
atgcatacattgaagaaagacctagacatcaggatagaatttaagttttctgagtctgtt
gacatggaaagagttttgcaaaagttattattcaaatctttccaaaataatctatgccat
tttcttgggcatgaaaaagctggatatcattttatagacaaaaatcaacaggtgattctg
catccttcatctgcacttcagtcgctcgcttcttttccagaatgggtaattgttgaaaat
attttgcaaacttccatggattatgctttgaatgtaacagctgttgcagatgaagatatc
ttggatgcactcgacaacagatcgctaaagtttgattttaaagacgttacagagagaaaa
gtaacacaagtcgtgactgaatatgttggaattcaaggtcacaaagagtttgtaggacct
cgattctgtaaagtgagggcaatgcaagaacaacttttaaagcaacacaaagatgcagtg
ttcgtgattgatgcagatcgtgataaaggcgaaatctctatctttgctcctattagagat
aaaaacatttatttgcaaactttgaaatcggccttagatccaataagagaaaaaataaga
tcagaaactgcagaacatcctgttatacccgaaattcaaagtgtaaggattgtcatagga
gctggaggtcaaattcaagacgttttataccatgatgagtttaagaatgtattcatattt
ggtgaaaaccctggatctaatgatagaataaaggaatggtttggacagtacggttcaatt
tcttcatttattccaaagtcacaaaaaagcagaaatccaaaatatattggtcagatcaca
tatgaaaattctgagtcagcccgaaaagcagtaaatgcaactgaaaaaggacagtgtgat
tatacagcaagcccaccaaaagtgaaagcaaagtctgatggaggtgatttgctgagagca
agacttacatggtgcagacgtaagtctcgtggatttggtttcgttgaaattctagatgaa
aataaaattgatatgataatcttgtcttgttcatcgaagaaggttaatgctgggggcaaa
tacatgaaaatcaaacgaaaacaaaatgaaagacaagatgaaaagaaaaacgaattgtat
gttagtggacttggtgaatctgtcaacgaggacgttctgcgtgaatgttttctaaacaat
tttgatgtttcggaagaagacattggaaaagttgctattgtgcgggaaaagaaagacaca
agaccagagatgttgcaaagtctaaaatctcagcttgaagatgcttttagtaataacata
gagcgagacatgttttctgtgtcagtaatggagccaaaaccagccgatttcacctaccag
gcttcaataacctgtaaagacccagagaaggggttagaagtttgctccagcatgcaacat
aacttgtttattgaagggcattccgtgtctattacccctgaaatgaatacaagactttct
gttttaacccccgtttaccagcgtatagaaaaagaaatagaaaggtattgtgagaaaatt
cgaaatgaaaccaggggaagaagagctacggtgagacgtttaaagaatgaaaaatacgtc
attgacatcagtaccgatagcattgaaagtctggtagacacaagaaacgaaatacagaga
atgttagagggcgaaaaagtcaacgtggatcggatccctgaccttccgcatctttttact
cgagatggacaagagaaagtgaggagagtgatgcaaaaaacaaatacaaccattttgtta
gatcacagaaacatatcagtgtccatccatgggaaaactgaagagcgagttttggcttta
gaaaagattaagaggtatgttgagaaactatcatcgtcaaaagtgaggctctacgacctt
aaaggagaatcgaaaccacctggtttgatgaaagctgtcattttgaagcatggtaaggat
ctacaaggtctgaaagatttgtctgcgttaacggcgattgaattggatctcagaaaccat
agaataaagatgctaggttcagatgatgcggtcgcaaaagctgtcgaggaaattgatgaa
atggcgactcaggtgccgggaaaatgttccatatcaattacttcgaatgagccagagtgt
gctatatgtctttgtgtaatcccagaaactgaaatgtacagactggaatcatgtggtcat
ccttactgcaaggactgtgttaaactaaatttagaatctactatgcaaaggagagaattt
cctcttaaatgctgccatgatgtgtgtcagatgttatgggcatggaaagatttcatttac
atgaccaatataggattttgtagtctgcaaaacataatagattcatcaatatcgagtcat
gtacgagaaaataaagacaaagtaaagtactgcatcacccctgattgtccgatggtatac
aaggttactgaaaatggagggaggattgtctgtgataaatgtaaaactgggatgtgtagt
agttgccatgttgaataccacgatggacttttatgttaccagtacaagctgtcaaaagga
aatgtaaattataataatgagtgttggattcaagaatggatgcgtcaagatcctataaat
cggaaacagtgtcctaggtgtttcacgggcatagagaaaaatggtggttgtcaacacatg
acatgtcaagcctgcactattcacatttgttggacctgcatggaaacgttcaactctgga
acagagtgctacgaacatatgggtaccaaacattag
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integrated database retrieval system
