Crassostrea virginica (eastern oyster): 111127309
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Entry
111127309 CDS
T09197
Name
(RefSeq) DNA repair protein RAD50-like isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03440
Homologous recombination
cvn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
111127309
03450 Non-homologous end-joining
111127309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cvn03032
]
111127309
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111127309
DNA replication proteins [BR:
cvn03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
111127309
DNA repair and recombination proteins [BR:
cvn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
111127309
BRCA1-C complex
111127309
NHEJ (non-homologous end-joining)
MRX complex
111127309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
SbcC_Walker_B
AAA_21
ABC_tran
Fez1
AAA_13
CENP-F_leu_zip
AAA_29
AAA_16
DotD
Motif
Other DBs
NCBI-GeneID:
111127309
NCBI-ProteinID:
XP_022328122
UniProt:
A0A8B8DJ06
LinkDB
All DBs
Position
3:72754085..72784110
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIEKMSIQGIRSFGPDDSDKGIISFFTPLTLILGPNGTGKTTIIECLKYMTTGVMPPG
SKGGAFIHDPKVAHERQVKAQIRLQFRDVTNNRMVIQRIMEATQKVKKIEMKTLDGVITR
YDVNGEKKSISSKCAEIDREMITSLGVSKPVLENVIFCHQEDSNWPLSEGKALKEKFDAI
FASTRYVKALETIRKVKQTQDQDLKLYKQEVTHLKQLKDKSEQLEADKNERETKMMACRE
SVEKIESKLRPVIEKLDQIGNQSDKIYKIQTNIEKHRSEMKMMEGSAADLREQIKNEFQG
SVEELKRKIAEFENMVQERQETMEQFQLAQRELNKELEKLGQERGDLLMEVGKLEQESER
YKGNMKRRDEEIKKLATKYDIEGYRKGELTDEQYRTFMDIIKTKIESLLEEGKKVKVEFD
EKDANMQQKLDDVRDKKTKLEQNERLKKDLMTENTQKIRQINQKLSEVEASAGRRDQITR
ELKRAEFELAKTEKTVDVNKIKQEIECLSKEKSKLDATISDLSSEMNRLHLQSSARAQLD
VLKKDKVTKEEQIRRLRAKQEDTLTYLLGHVPARNVRGELDEYIGKQTDSVKRLSQDIQK
IRSVLSSKEAEKKMLGESLKKKEAELKNVEEKVFSVCGSQNFDEGLSSLQEKMSTAQDQR
GSLLGAEHFFQKYVNDLEKQEPCCPLCHREFDTDQEVKELIIELKNKLRMVPSKLVKTEK
DLDEYRTKYDAMMQLKPLKENITVLEDQEVPELKNKLKKINEDISRLREDVQTKEDDLHV
QEQDDETAKQIQPDIVMMDRYQGEVTELEKKISTEGAKLSGGDSDRSLQDVINEKEDLQM
KVDSSNKQLESMRQKINLHTEQVQQLKSDVNKLTSEKLQIDSDLQQRYKLEEDKAKLLSE
NDQYGKEVTESQDQIKPLQTQLEKLRKEKEKILQDKEERTEYMKNEVDKVKNDTAKVKNV
NLEIKSYNQSGKADTLADNKNRLNKITEKAAKKEEELKDTADSLNELRDELAKNTERERE
LTDNLRLRRHLQDIEDKKKSIEELEQELGGIDAKHLERERRRLLAEQQEFLREKQMSENR
KMALHGELSSIVNELKSEMYKNAGIKYRDKMIILKTTELASSDLEKYYKALDKAIMSYHN
MKMDEINKIIRELWRNTYKGNDIETIEIRSDEDEAGLMKTRRTYNYRVVMIKGDTALDMR
GRCSAGQKVLASLIIRMALAETFCLNCGILALDEPTTNLDRENIESLALALVEIIKSRSS
QKNFQLVVITHDEDFVELLGRSDYVDEFWKVRKDANACSKLVKAKVEDLHSR
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaattgagaagatgtccatacaggggatccgaagttttggccccgatgattcg
gacaaaggaattataagtttcttcaccccattgactcttattctgggtcctaatggaact
ggtaaaacaacaattattgaatgtctgaagtacatgacaactggagttatgccccctggc
agtaaagggggcgcttttattcatgacccaaaagtagcccatgaacgccaagtgaaggcc
cagattcgactgcaattccgagatgtcacaaacaatcgaatggtaattcaaagaattatg
gaggccacacaaaaggttaagaagatagagatgaagacactggatggagtgataacacgc
tatgatgttaacggtgaaaaaaagagcatcagctccaaatgtgcggaaatagatcgagag
atgataacatccctaggggtgtctaaacctgtgctggaaaatgtcatcttctgtcaccaa
gaggactctaactggccactgagtgaaggaaaagctctgaaagagaagtttgatgccatc
tttgcctccacgcgatacgtcaaggctctggaaactatccgtaaggtgaagcagacgcaa
gaccaggatctgaagctgtacaaacaggaagtgactcacctcaaacagctcaaggacaaa
tcagagcagttggaagcagacaaaaatgaaagagaaacaaaaatgatggcatgccgagag
tcggtggagaagatcgagtctaaattaaggccagtcattgagaagctggaccagattgga
aatcaatcagacaagatttacaaaatacaaacaaacatcgagaaacatagaagtgaaatg
aaaatgatggaaggctcagcagcagatctacgggaacagatcaagaatgagttccaaggt
tcagtggaagagttgaagaggaagattgcggagtttgagaacatggttcaggagagacag
gaaaccatggaacagtttcagttagctcaaagagaactgaacaaggaactggaaaagctg
gggcaagagagaggggacctactgatggaggtcgggaagctggaacaggagtcagagaga
tacaaaggaaacatgaagagaagggatgaagagatcaagaaacttgcaacaaaatatgat
attgaaggatataggaaaggggagctaactgatgaacagtaccgaaccttcatggacatc
attaaaaccaaaatcgagtctcttttagaggaagggaagaaggtcaaggttgagtttgat
gagaaagacgcaaacatgcagcagaaactggatgatgttcgtgacaagaaaaccaaactg
gaacagaatgaaagactcaagaaagacctcatgactgagaatacacagaagattcgacag
attaaccagaaattgagcgaggtggaggcgtccgctgggaggagggaccagataactcgc
gaacttaagcgagccgagtttgagcttgctaaaacagaaaaaacagttgacgtaaacaaa
attaagcaggagattgaatgcctttccaaagaaaagtccaaattggatgcaactattagt
gacctcagttcggagatgaatcgcctacaccttcagtccagtgccagggcccaactggac
gttctgaaaaaagacaaagtcaccaaggaggaacagattcgtagattacgagcaaaacaa
gaggacactttgacgtatctgcttgggcatgtgcctgcaaggaatgttagaggagagctt
gatgaatacatagggaagcagactgattccgtgaaacgtctaagtcaagacatacagaaa
atcagaagtgtgctgtccagtaaagaagcagaaaagaaaatgcttggggaatctcttaag
aaaaaagaagcagaactaaaaaatgtggaggaaaaggtcttttctgtgtgcggaagtcaa
aattttgatgaaggcctgtcatccctacaggagaaaatgtccaccgctcaggatcaaagg
ggatcattgttgggagcagaacatttctttcagaagtatgtcaatgacctagaaaaacag
gaaccatgctgtcccctatgtcaccgagagtttgatacagaccaagaggtcaaggagctc
attattgagttaaaaaataagctgcgtatggtaccaagcaaattagtgaagacagaaaaa
gatcttgatgaatatagaacaaagtatgatgccatgatgcagctgaaacctctcaaagaa
aatatcacagtcttagaagaccaagaggtcccagaattgaagaacaaactgaagaaaatc
aatgaggatatatccagactccgagaagatgtacaaacaaaagaggatgatctgcacgtc
caggaacaggatgatgagacggccaaacagatacagcccgatatagtgatgatggacagg
taccagggggaggtaactgagctggagaagaagatttctacagagggggccaaactgtca
gggggagattctgacagatctctccaagatgttatcaacgagaaagaggatttacagatg
aaagttgattcttcaaacaaacaactagagagcatgagacagaagataaacttacacaca
gagcaagttcagcagttaaaatctgatgtgaacaaactgacctcggaaaagctccagata
gacagtgatctacaacagcgttacaagcttgaggaagacaaggccaagctcctcagtgag
aatgatcaatacggcaaggaagtcacggaatcacaggatcagatcaaacccttgcagact
caactggaaaagcttagaaaggaaaaagagaaaatcctacaggataaggaagagcgcacg
gaatacatgaagaatgaggtagacaaggtgaagaatgacacagcaaaggttaaaaatgtc
aacctggagatcaaaagttacaatcaatcaggaaaggcggatacgttggcggacaacaaa
aatcgactgaacaagatcacagaaaaggctgccaaaaaagaggaggaattaaaggacact
gctgacagtctgaatgagctgagggatgagctagctaaaaacacagaaagggagagagaa
ttgacagataatcttcgacttcgccgacatttacaagacatcgaggacaagaaaaagagt
atagaggagctggagcaagagttgggtggtattgatgccaagcatctggagcgcgagagg
cggcggctactggcggagcagcaggagttcctgagggagaaacaaatgtctgaaaacaga
aagatggctttacatggggagttgtccagcattgtcaatgagctcaaatcagagatgtac
aagaatgcaggcataaaatacagggacaaaatgataattctaaaaacaacagaattagca
agcagtgatctggagaaatattacaaagcacttgataaggctattatgagttaccacaat
atgaagatggatgaaatcaacaaaatcattcgggagctatggaggaatacttacaaggga
aatgacatagagacaatagaaatccgctcagatgaagatgaggctggactgatgaaaacc
aggaggacttacaattaccgggtggtgatgattaaaggagacactgctcttgatatgagg
gggcgctgtagtgcaggtcaaaaggtgcttgcttcgctgatcattcgcatggccctggct
gagaccttctgtctgaactgtggtatcctggctttggatgaaccaacaaccaacctggat
cgtgagaacatagaaagcctggctctggcacttgttgagatcatcaagtcgcggtccagc
cagaagaactttcagctggtagtcatcacccatgacgaggatttcgtcgaattgttaggg
aggtctgattatgtggatgaattctggaaagttcgcaaagatgccaatgcctgttcaaag
ttagtgaaagctaaagtggaggatctacacagtagataa
DBGET
integrated database retrieval system
