Crassostrea virginica (eastern oyster): 111127420 Help Entry 111127420         CDS       T09197                                  Name (RefSeq) DNA-binding protein SMUBP-2-like   KO K19036   ATP-dependent RNA/DNA helicase IGHMBP2 [EC:5.6.2.5 5.6.2.3] Organism cvn  Crassostrea virginica (eastern oyster) Brite KEGG Orthology (KO) [BR:cvn00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03009 Ribosome biogenesis [BR:cvn03009]     111127420    03012 Translation factors [BR:cvn03012]     111127420 Enzymes [BR:cvn01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      111127420     5.6.2.5  RNA 5'-3' helicase      111127420 Ribosome biogenesis [BR:cvn03009]  Eukaryotic type   Other ribosome biogenesis factors    111127420 Translation factors [BR:cvn03012]  Eukaryotic type   Initiation factors    Initiation associated factors     111127420 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  AAA_11 AAA_12 SMUBP-2_HCS1_1B AAA_30 R3H AAA_19 zf-AN1 Viral_helicase1 ResIII DEAD nSTAND3 Znf_XAF1_N UvrD-helicase AAA_16 SLFN-g3_helicase Helicase_RecD T2SSE IstB_IS21 Zot AAA_25 AAA_22 AAA Flavi_DEAD Herpes_ori_bp PhoH ABC_tran Glyco_tranf_2_3 NPHP3_N UvrD_C_2 ATPase Motif Other DBs NCBI-GeneID:  111127420 NCBI-ProteinID:  XP_022328302 UniProt:  A0A8B8DJH6 LinkDB All DBs Position 3:47158314..47168708 Genome browser AA seq 1003 aa AA seqDB search MTLETFVNQHIQLLEKEREAEIEETSHLNDTLPPKELQRRGVCLLKLHIRSRRTGFYGRT VVTFEPGGGSQELPAHNLTPGDIVSLNASSSQQENESLGSGIVTHAGKSAISVAFDEKED LFDLKEEDHYKLTKLANDVTYKRLKNALNNLRKGDFGKSSKLVNVLFGEAELSPPFDLKD IHLVNTGLDESQEDAVKFALSQPEVAIVHGPPGTGKTTTVIEIIIQAIKQGNKILACAPS NIAVDNLVERLALNKQRVVRLGHPARVLPHIQKYSLDAILSSSEETRLVEDVRKDLDKNL SAIRKTADRGEKQKIREDIKFLRKELKQREDAASREVLKRADVVLATLSSADPSGPIKYL DNEHFDLVVIDECSQAVEAACWIPLLRAPRCVLAGDHLQLPPTILSKEAASAGLEKTLME RILDLYNGKVMRMLTTQYRMHKLIMQWSSDQLYEGKLTAHSSVADHLLRDIEYVEEEEET SEPLLLIDTAGCQLFELDVPEEISKGNEGEADIVSNHVEKLISLGVSQEEIAVIAPYNLQ VELLRLRLSNNYPKVEIKSVDGFQGREKEAVIISLVRSNKKGEVGFLAEKRRINVAITRA RRHLAVVCDSETVGHDTFLKSLVEYMSTNGVVKTAQEFVEAGIVYNKITRPDHLNDLLTL PSNKGARPKSAKNQKKSQSKQKPVKAEDQVPPLEKYHKTEEETNERIKEFQGYLDNFVQE ESSGELEFPSSLNSHDRMLVHELSEKMGLIHISKGAGKDRHIVVSKPGSSSPSGVRTTVQ SPFENSERPDTEKPVNQAVKSSPTEKEDLEGVPDTREIPSQKESDKIVCRHCSKSVIKAN IQLHETHCLRQQREKSAPKSANSVGKKQKNASVPKIPNTHADVMAKLDKVDGDDLDSLIA AVQSVDRVCSFKKCKTSTQTLSQSCEFCRRRFCLSHHIPEVHGCGEAAKAHARATIIREG VLYRGSGVPDKKPDPTQKAQLQRKLDKKLTEMATKRQAKKSKK NT seq 3012 nt NT seq  +upstreamnt  +downstreamnt atgactttagaaacttttgttaatcaacatattcaacttctagagaaagaaagagaggcg gagatagaagaaacaagtcatttaaatgacaccctgccgcctaaagaacttcagagacga ggcgtttgtctgctaaagctccacataagatctcgtcgaacaggattttatggaagaaca gttgtcacatttgaaccaggaggaggaagccaagagttacctgcccataaccttacacca ggtgacattgtgagtctaaatgctagttcatcccaacaagaaaatgaaagtctcgggtca ggtatcgtcacccatgcaggaaagtcagccataagtgtagcttttgatgaaaaagaagac ttgtttgatttgaaagaggaagaccattacaaactcaccaagctggcaaatgatgtcaca tataaaagactgaaaaatgctctgaataatctcagaaaaggagattttggcaaatcaagt aaactcgtcaatgtgttattcggagaagctgagctgtctcccccttttgatctcaaagat atacacttggtaaacactgggctggatgaatctcaggaagatgctgttaagtttgccctc tctcagccagaggtggccatagttcatggccctccaggaacagggaagaccaccaccgtc atagagatcatcatccaggccattaaacagggaaacaagattttagcctgtgcaccttcc aatatagctgtggacaatctggtggagcgactggcactcaataaacagagagtggtgaga ttggggcaccctgcccgagttcttccacacatccaaaaatactcactagatgccatcttg tcctccagtgaagagacacgccttgtggaagatgtgcggaaagacttagacaaaaacttg tcagccattagaaaaacagcagatagaggtgagaaacagaaaatacgagaggatataaaa tttctacgaaaagaattaaaacagagggaagatgctgcttccagggaggtcctcaagcga gcagatgttgtcttggcaacccttagctcagctgacccaagtggaccaatcaaatatctt gataatgaacactttgacttggttgtaattgatgaatgttcacaggcagttgaggcagcc tgttggattccccttttgagggccccacgatgtgtattggcaggagatcatctacagctt cctccaaccatcctcagcaaagaagctgccagtgctggacttgagaagactctgatggag agaatccttgacctttataatggcaaggtcatgagaatgttgacgactcagtacagaatg cacaagctgatcatgcagtggtcctcagatcagctgtatgagggtaaactcactgctcac tcctcagtggctgatcacctcctaagagatatagaatatgttgaggaagaggaggaaacc tcagaaccattgctgttaattgacactgccggctgccagctgtttgaacttgatgttcca gaagaaatctcaaaaggaaacgaaggagaggcagacattgtcagcaatcatgtggaaaaa ttaatcagtcttggagtcagtcaggaggaaatagcagtgattgccccttataacctgcag gtagagttactgagattacgattatccaataactatccaaaagtagaaatcaaatctgtt gacggatttcaaggaagagaaaaggaagctgttatcatctcactggtcagaagcaacaag aaaggtgaagtagggtttttagcagagaaaaggagaatcaatgttgccataacaagagca cggcgccacctagcggtagtctgcgacagtgagactgtgggacatgacacctttttgaag tctttagtcgagtacatgtcaactaatggagttgtgaaaacagctcaagaatttgtagaa gctggaattgtgtacaacaaaatcacaagacctgatcaccttaatgaccttttaacctta ccaagcaacaaaggggcaagacccaagtctgcaaagaatcagaagaaatctcaaagcaaa cagaaaccagtaaaagctgaagaccaagtccctccccttgagaagtaccacaagactgaa gaagaaacaaatgaaagaatcaaggaatttcaaggatatttagataattttgtacaggag gaatcttcaggagaactagaatttccgtcttccctgaactcgcatgacaggatgcttgta catgagttatcagagaagatgggactgatacatatcagcaaaggagcaggcaaggacaga catatagtggtgtcaaaaccaggaagtagtagccctagtggtgtcagaacaactgtgcag tctccttttgagaattctgagaggccagacactgagaaaccagtaaatcaagctgtgaag tcttctccaacagaaaaagaggatttagagggcgtaccagatacacgagaaattccaagt cagaaagagtcggataaaattgtgtgtagacactgtagcaagtccgtcataaaggcaaat attcaactgcatgaaacacactgtttaagacagcagagggaaaaatccgcacccaaatcc gcaaattcagtgggaaaaaagcaaaaaaatgcgagtgtgccaaaaattcccaatacacat gcagacgtaatggcaaaactggataaagtggatggagatgatctggatagcttgattgca gccgtccaaagcgttgacagggtgtgtagctttaagaagtgcaagaccagcacacagaca ctgagtcagtcatgtgaattctgtcgaaggaggttctgtctcagtcatcacataccagag gtccatgggtgtggggaggcagccaaggcccatgctcgggcaaccatcatcagggagggg gtgctctacagggggagtggggtccccgataagaagcctgaccccactcagaaggcacag ctgcagaggaagttagacaaaaagttaacagagatggcaaccaaaagacaggccaagaaa tccaaaaaataa

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