KEGG   Crassostrea virginica (eastern oyster): 111127828
Entry
111127828         CDS       T09197                                 
Name
(RefSeq) denticleless protein homolog
  KO
K11790  denticleless
Organism
cvn  Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:cvn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cvn04121]
    111127828
Ubiquitin system [BR:cvn04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     111127828
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML EIF3I Beta-prop_RIG_2nd Beta-prop_DCAF12 Beta-prop_WDR19_1st Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_TEP1_C WD40_RFWD3 Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_SCAP NBCH_WD40 Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st WDR54 WD_LRWD1 MIOS_WD40 Beta-prop_RIG_1st
Other DBs
NCBI-GeneID: 111127828
NCBI-ProteinID: XP_022328805
UniProt: A0A8B8DM21
LinkDB
Position
4:16294120..16307873
AA seq 693 aa
MIVNRLQRRALGLPVKLDVSNVLESFESLKTDEYIGEDEGAFVPPLACEFCKVKSKGHIL
AVVDENGFIVIYNTKKTGQMAIVDDWQAHNNAIFDMAWVEGEGRILTASGDQTVVLWDVE
RQEKLDVFRGHTSSVRCVCAQQGSNAVFATGSRDGHIMIWDARCNKKDGHISPVNIIRNA
HSITLRSQGHKTANRKLGPPRDSQMSVTAVLFQSDTNLFSAGTIDGCIKEWDLRRNFSIS
SSDALPKVTFTYPGLSKRRLGYSNLAFDSSYTQLFANCRDDVIYQYNVINYSSKPVHCYK
GHESGSFFIKSCVSPDNNYLLTGSTDEMAYIYKIGCPKQSPIVLKGHGMEVSDVKWCPTD
FSKIATLSDDNTMRIWRLHRRPGPADPGEVTGSAERTHKEIGVSADDLEQRLAEKADHTL
ISSSNNSVGNKLCSTSMVSPSIKSWLSKSLKKTKLESSEGQRSVDSTSVKNSDTGKVSIF
QGNRLPCKRKLINEDSEDSGSFERFAKRQRVQDSPIKVSELRSPRKLEIKQSPRKIPPTL
TGSLQKDPAGGSPQVSRSPLTPRLCPLSSSSNVADRISCGPTETISSPTVNLPNLVKEGS
VNKINIFYKQSDKENSPQKLNWLSQIRQQKLETREERSKGSPKRALFEKVAESPRSRSSQ
SSSSQSSSQEEIRSPVPKGMKPLHAYFKRKKEV
NT seq 2082 nt   +upstreamnt  +downstreamnt
atgattgtcaacagattacaacgtcgtgcattgggtcttcctgtgaaattagacgtgtca
aatgtgttggaatcatttgaatccctgaaaacagatgaatacattggagaagatgaaggg
gcgttcgtcccccctctggcttgtgagttttgtaaagtgaaatcaaaagggcacattcta
gccgtggttgatgagaatggtttcatagtgatttacaacaccaagaaaacaggacagatg
gccattgttgatgattggcaggcccacaacaatgctatatttgacatggcgtgggtggag
ggggaggggaggatcctgaccgcctcaggggaccagaccgtagtcctgtgggacgtggag
aggcaggagaaactggacgtcttccggggccatacaagctctgtccgatgcgtgtgtgct
caacaaggcagcaatgctgtttttgccacaggatctagagatggtcatataatgatctgg
gatgcaagatgcaataaaaaggatggacatatttctcctgttaacattataagaaatgca
cattcaataactctacggtctcaaggacataaaactgcaaataggaaacttggtcctcca
agggatagccaaatgtcagtgactgctgtgctttttcagtcagatacgaatctcttttct
gctggcaccatagatggatgtatcaaggaatgggacctccggaggaacttttccatttct
agttctgatgctttaccaaaagtcacttttacctatccaggcttgtcaaaaagaagacta
ggttactctaacctagcatttgattccagttatacccagctcttcgccaactgtagggac
gatgtcatataccagtataatgtcatcaattacagctccaaaccagttcactgttataag
ggccatgaaagtggttccttcttcatcaagtcctgtgtcagtcctgataacaactacctc
ctcactggatccaccgatgaaatggcatacatctacaagataggttgtcccaaacaaagt
cccattgttcttaaaggccatggaatggaagtgtcagatgtaaagtggtgccctaccgac
ttctccaagatcgccacattgtctgatgacaacaccatgagaatatggcgtctacatcga
cgccctggaccggcagatccaggggaggtcaccgggagtgccgaacgaactcacaaggaa
ataggtgtatcagctgatgatttagaacagaggttggcagaaaaagccgaccataccctg
atatcatcttcaaacaattctgtaggaaataaactgtgtagtacctcaatggtgtctcct
tctatcaaatcatggctatcaaaaagtctcaaaaagacaaaactagaatcatcagaaggt
caaaggtcagtggattcaacatcggtgaaaaacagtgacactggtaaagtatcaatattc
caagggaaccgcctgccttgtaagagaaagctgatcaatgaagacagtgaggacagtggg
tcgtttgagagattcgccaagaggcagagggtacaggacagtccaatcaaagtctccgag
ttaaggagtcccaggaaactggaaatcaaacagagtccgaggaagatcccccccacacta
acaggttctctccaaaaggacccagcaggtggcagtccacaggtatccagaagcccccta
accccacgtctgtgtcccttgtcctccagcagtaatgtagcggatagaatcagctgtggt
ccaaccgagacgatatcatcacccactgtcaacctgccaaacctggtgaaagagggcagt
gtcaacaaaatcaacattttctataaacagagtgataaggaaaatagtcctcagaaactg
aattggttatcacaaattcgacaacagaagttagagacccgggaggagaggagtaaaggg
tcaccaaagagggcgctgtttgagaaagttgcagagtcacccagatccagaagttctcag
agttcctcgtcccagagcagcagtcaggaggaaatcaggtcaccagtgccaaagggcatg
aaacccctgcatgcttacttcaagagaaagaaagaagtttag

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