Crassostrea virginica (eastern oyster): 111128470
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Entry
111128470 CDS
T09197
Name
(RefSeq) CDK-activating kinase assembly factor MAT1-like
KO
K10842
CDK-activating kinase assembly factor MAT1
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03022
Basal transcription factors
cvn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111128470
09124 Replication and repair
03420 Nucleotide excision repair
111128470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvn03021
]
111128470
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111128470
Transcription machinery [BR:
cvn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
111128470
DNA repair and recombination proteins [BR:
cvn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
111128470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MAT1
zf-C3HC4_5
zf-RING_5
zf-C3HC4
zf-RING_UBOX
zf-UDP
TRAF3_RING
zf-RING_2
zf-RING_4
DUF1542
zf-C3HC4_2
HMBD
DZR_2
DZR
Cnd1_N
Zn_ribbon_6
DUF1272
DNA_ligase_ZBD
Motif
Other DBs
NCBI-GeneID:
111128470
NCBI-ProteinID:
XP_022329788
UniProt:
A0A8B8DQ17
LinkDB
All DBs
Position
4:complement(50917663..50922504)
Genome browser
AA seq
319 aa
AA seq
DB search
MEDQGCPRCKTTKYRNPSLKLLVNVCGHSLCETCVEALFVKGSGICPECGTALRKNNFRV
QLFEDPFIEKEIEIRKKILKDFNKKEEDFATLDEYNDYIEMIETLIFNIVNNIEVDETKQ
TIEQYRRENKDQISKGRNKKSKDEEYLESLIEQEKEESSLKRKLIVEEEQREKDSRKKHK
EALLDELMFSDRSALDILNEHKTELDKENDYHIPVMATTKFSTGINWYYMYYIFYFIGSQ
GPFMSVPTEIIELYTYSPIHLDVLGPEPPEEDALETTGYLRNIRSASEEEKGGGFHSKLA
CMRALLDAVNGLFYLPDQV
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atggaagaccaaggatgtcctcgttgtaagacgacaaaatatcgaaatccatccttaaaa
ctacttgtcaacgtttgtggacactctttatgtgaaacctgtgtagaagctttgtttgtc
aaaggttctggaatatgcccagaatgtggaacagctttaagaaagaacaattttagggtt
caattatttgaagatccgtttatagaaaaagagattgaaataagaaaaaagatactgaaa
gatttcaataaaaaagaggaagattttgcaacattggatgaatataatgattacattgaa
atgatagaaacattaattttcaacattgtaaacaacattgaagttgatgaaacaaaacag
acaatagaacaatacagaagggagaataaagatcaaataagtaaaggaagaaataaaaag
agcaaagatgaagaatatttggagagccttattgagcaggagaaagaggaaagttcgctg
aaaaggaagctcattgtggaggaagaacagagagagaaggactctcgcaagaaacacaag
gaggctcttctagacgaactgatgttttcagacagatctgccctggatattctcaatgaa
cacaagacagaactagacaaggagaatgactatcatattcctgtgatggcgacaacaaaa
ttctccactggaataaactggtactacatgtactatatattctatttcattggatctcag
ggacctttcatgtccgttccaactgagataatagaactctacacctatagccccattcac
ttggacgtgttaggaccggagcccccagaggaggatgccctggaaactactggctatttg
agaaacatcagaagtgcatcagaggaggagaaaggaggtggatttcattctaagctggcc
tgcatgcgggctctcttggatgctgtgaatggactgttctatcttccagatcaagtctga
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