Crassostrea virginica (eastern oyster): 111128613
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Entry
111128613 CDS
T09197
Name
(RefSeq) cartilage oligomeric matrix protein-like
KO
K04659
thrombospondin 2/3/4/5
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn04145
Phagosome
cvn04512
ECM-receptor interaction
cvn04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111128613
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
111128613
09142 Cell motility
04820 Cytoskeleton in muscle cells
111128613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cvn04131
]
111128613
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cvn04147
]
111128613
00536 Glycosaminoglycan binding proteins [BR:
cvn00536
]
111128613
Membrane trafficking [BR:
cvn04131
]
Endocytosis
Phagocytosis
Opsonins
111128613
Exosome [BR:
cvn04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
111128613
Exosomal proteins of colorectal cancer cells
111128613
Exosomal proteins of bladder cancer cells
111128613
Glycosaminoglycan binding proteins [BR:
cvn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111128613
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
EGF_3
EGF_CA
cEGF
COMP
Motif
Other DBs
NCBI-GeneID:
111128613
NCBI-ProteinID:
XP_022330052
UniProt:
A0A8B8DPB5
LinkDB
All DBs
Position
4:59057626..59071747
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AA seq
1164 aa
AA seq
DB search
MASTPLCFFCVFFGLINISLEFKKVDQDAVSSAFLMTSDVFLTGELFDEKPHQGALVLFR
GEDEILGTKFIVYLEFSSNQVIIHVKSRHGKEVQITFPCQPQLKENDIRITLHFKNLLNS
PNQILLYINCKLVGNETSSIPIREGLVGPQRQQINPRFWFYIGNDVRPILQNQGCPVVIP
TQRPPPRNPHETIVRVVVPTRPKSKDNTKIMTSSRDETRHTTHTSGEPLPESKQKITLPD
STAPPIDPVEAQFLALSLRTLTSAVQMLQREITLQSQETRQLRETLSQCEMCRGSGRGSP
DVDIPEKNVTCLEKPCFQDVICQNTSRGFQCGDCPIGYSGDGVTCVPKITCQNDPCYPGV
PCTETEGGVQCGQCPEGVTGDASQRGCQRVERCDSNPCYPGVTCIDTTYGYTCGDCPEGM
EGNGTLSGCVPSSIRCEHFPCFTAVACIDTEDGYQCGACPQGMTGNGTKFGCQPMECDIN
SCFPDVECVDTPEGFRCGSCPHGFKGNGTQCTDIDECRVHNPCHEMTECINLTPGFKCAT
CPPGYSGNDVFGVGIENLETLKQVCEDVNECEDGNNGGCVDYSHCTNTLGSFNCGECIED
YVGNQTIGCREMTTMCPDGITECHKHALCIMGTSGFDCQCRIGYAGNGKYCAKDSDLDGV
PNIELRCKEFRCRRDNCREVPNSGQEDVDLDGIGDACDEDIDGDSIVNNPDNCPYVANPG
QEDSDEGQKDLRGDACDNCPSVPNTDQRDSDGDGLGDACDEDTDNDGLLNEEDNCPRVAN
IDQSDWDEDGVGDLCDNCPFVANKVQNDSDHDFIGDVCDTNEDEDHDGIQDNYDNCEFTP
NADQLDTDDDNIGNVCDDDDDDDGIDDDYDNCPLVWNPDQTDTDGDGFGDACVDDSDGDG
FADVEDVCPEHKDIHSTDFRSFNTILLDPVGDSQIDPEWHIRNEGAEIVQSKNSDPGLAV
SNTTFSGVDFSGTFFVNTEVDDDYAGFIFSFQDSSRFYCIMWKKSAQTYWHPTPFRAVAE
PGIQLKLVNSKTGPGEYLRNALWHTGDTEDEVQLLWKDPRNAGWKEKTAYRLELIHRPNI
GLIRLLLFEETNLVADSGNVYDATLRGGKLGVFSFSQEGVIWSDLVYRCNDYVPRGLLRE
GAEPLEPMDGVLADEGLHTFVKRR
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaacaccactgtgctttttctgtgtattttttggattaatcaacatttcattg
gaatttaagaaagtggaccaggatgccgtcagctcggcgttcctgatgacgtcagatgtg
ttcctgacgggggagctgttcgatgaaaagccccaccagggggcactggttctgttccga
ggcgaggacgagattctagggacgaagttcatcgtatacctggaattttcatcaaatcaa
gtaattattcatgtcaaatcacgccacgggaaggaagttcaaattacgtttccatgtcaa
cctcagctgaaggagaatgatattcgaatcactctgcatttcaaaaaccttctaaattcc
cctaatcagatcctactgtacatcaactgtaaattagtgggcaacgagaccagctccatt
cctatccgtgagggtctagtcggaccccagagacagcaaatcaaccccagattttggttt
tacattggaaatgacgtgagaccaattctccagaaccagggttgccccgtcgtgatcccc
acgcagcgacctccccctaggaacccccatgaaacgattgtacgtgtagtggttcctacg
aggcccaaatcaaaagacaatacaaaaattatgacgtcatccagagacgaaaccaggcac
actactcatacttctggggaaccacttccggagagtaaacaaaaaataacacttccggat
tccacagccccacctatagatccagtagaggctcagtttctcgccttgtcacttcggacg
ctgacttccgctgtgcagatgttacaacgggagataactcttcagagccaggagactaga
cagctccgcgagaccttgagtcagtgcgagatgtgcagaggcagcggcagggggagcccg
gatgtagatatcccagaaaaaaatgtcacttgtcttgaaaagccctgcttccaagacgta
atttgtcagaatacgtcacgaggattccagtgtggagactgtccaatcggttactctggc
gatggagtcacatgtgttccaaagatcacgtgtcagaacgacccatgttatccaggtgtg
ccgtgcactgagactgagggtggggtccagtgtggacaatgtcccgagggggtgacaggc
gacgcctcccagagaggctgtcagcgggtggaacggtgtgattctaatccatgctatcct
ggggtcacatgcattgacacgacgtacggatacacgtgtggagattgtccggagggtatg
gaggggaatgggacactaagtggttgtgtcccgtcctccatacgctgtgaacacttcccg
tgcttcactgccgtggcatgtatagacacagaggacggatatcagtgcggcgcatgcccg
caaggaatgaccggaaacggaacgaaattcggatgtcagcccatggaatgtgatatcaat
tcctgttttccggacgtggaatgtgtggacaccccagaggggttccgatgtgggtcttgt
ccgcacgggttcaaagggaatggaacccaatgtacagacatcgacgagtgtagggtacac
aatccttgtcatgagatgacggaatgcattaaccttactcctggattcaagtgtgcgaca
tgtcctcccgggtattccggcaatgatgtgtttggggttggcatcgaaaatctggaaacc
ttaaaacaggtctgtgaagatgtcaatgaatgtgaagatggaaacaacggtggttgtgtt
gattattcccattgcaccaatacactggggtcctttaattgcggggagtgcattgaggat
tatgtagggaaccaaacaattgggtgtcgggagatgaccacgatgtgtccagatggcatc
actgaatgtcacaagcacgcgctgtgtattatgggaacttccggtttcgactgtcaatgt
agaattggatacgctggcaacggaaaatactgcgccaaagacagcgacttagacggtgtg
cccaacattgaactgcgctgtaaggagttccggtgtaggagagataactgccgagaggtt
ccgaatagcggacaggaggacgtggatttggacggaatcggtgacgcttgtgatgaggat
attgacggcgacagcatcgtgaacaaccctgacaactgcccgtatgtagcaaatcctggt
caagaggactcggacgagggacagaaggatctgaggggtgacgcatgtgacaattgtccc
agcgtccccaacactgaccagagggactcggacggggacggtctgggggacgcatgtgac
gaggacaccgataacgacggtcttctgaacgaggaggataactgccccagggtggcgaac
attgaccagagtgactgggacgaggacggcgtcggtgacctctgcgacaactgtccattt
gtcgccaataaagtacagaacgactctgaccatgacttcatcggcgacgtctgtgatacg
aacgaagacgaggaccatgatggtatccaggacaactatgacaactgtgagtttacacca
aacgctgatcagctggacaccgatgacgacaacataggcaatgtgtgtgacgacgatgat
gatgacgatggtattgatgacgattacgacaactgccctctggtgtggaatcctgatcag
acagatacagacggtgatggatttggtgacgcatgcgtagatgacagtgacggggatggc
tttgctgatgtagaggatgtttgtccggaacacaaagacatccattcaactgacttccgg
tctttcaatacaatcttattagatccggttggcgattcacagattgacccggaatggcat
atccggaacgagggagcggagattgttcagtcgaaaaacagcgaccctggactggctgtt
agtaacacaaccttctcgggagttgactttagtggaacattctttgtgaacacagaagta
gacgatgactatgctggatttatctttagctttcaagacagttctcgattttattgtatc
atgtggaagaaatctgcgcagacgtattggcatccaactccctttcgcgctgttgcagaa
ccaggaattcagctgaagcttgtaaattccaaaactggccccggtgaatatctccgaaat
gctctatggcatactggagatactgaggacgaagttcagctactatggaaggatccccgg
aatgctggctggaaagagaagacggcgtaccgcttagagctcatacaccgtccaaacata
ggcctcatcaggttgttgttatttgaggaaaccaatcttgtagcagattccggaaatgtg
tatgacgccacgctccgtggagggaaactgggtgtatttagtttctcgcaagagggtgtg
atttggtctgacctggtctaccggtgcaatgattacgtgcccaggggacttctaagagag
ggggcggagccacttgagccaatggacggggtcctagcggacgaagggctacatacgttt
gtcaaaagacgatga
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