Crassostrea virginica (eastern oyster): 111128793
Help
Entry
111128793 CDS
T09197
Name
(RefSeq) nuclear cap-binding protein subunit 1-like
KO
K12882
nuclear cap-binding protein subunit 1
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03013
Nucleocytoplasmic transport
cvn03015
mRNA surveillance pathway
cvn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111128793
09122 Translation
03013 Nucleocytoplasmic transport
111128793
03015 mRNA surveillance pathway
111128793
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111128793
03041 Spliceosome [BR:
cvn03041
]
111128793
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
111128793
Spliceosome [BR:
cvn03041
]
Common components
Common spliceosomal components
Cap binding complex
111128793
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
NPV_P10
DUF1664
KIF9
COG5_N
DUF2564
Motif
Other DBs
NCBI-GeneID:
111128793
NCBI-ProteinID:
XP_022330352
UniProt:
A0A8B8DQ43
LinkDB
All DBs
Position
4:14388880..14400608
Genome browser
AA seq
790 aa
AA seq
DB search
MSRRRRDSSDEEEVGHSARKRRRGSENIDIEERLESLITRVGEKSTSSLESNLEGLASVL
EADLQNYKTKILRILCSCVVKLPEKMAVYTTLIGLLNAKNYNCGGEFVEMLVRNLKEALK
TGEYDNAKLIVRFIADCVNCHVIVAGSLLSMFDNFIEVTLEDNIPQVRSDWYVYAVMAAL
PWVAKELHEKKEAEFNKLLSTIENYISKRQKIHVPSLRVWTSDFPHPQEEYLDCLWAQIK
NLKANKWSEKQIVRPYLAFDGVLCEALQHTLPQIIPPSHNEETTYPLPRVIFRMFDYTDV
PEGPVLPGSHSIERYLIEEQIDRILCTNYVERKDCAAALLSFPSKNKIPLNYMIVEVMFS
QLFLLPVPPFLEIFYGSLLIELCKLQPGSMPQVLAQATEMLYERIDTMNVTCIERFANWF
AYHLSNFQFRWSWDDWSTCCQMDPELPKPKFVKEVLLKAMRLSYHQRMVETVPEGFEALI
PEKPHSEFKYEKEGAGSMPGTMVAHQLISSIKSKCTPEEAMVLLKDLPNPLSDEESDPTY
HPLRIDVFVSVLLHLGNKSFSHSFAAIAKFHHILKLLADTEEGQIWLLRTMFEVWSSHQQ
MMVVLVDKLLKTQIVEPSAVANWLFSSEMQPEFTKFYVWEIMHATIKKMSKQVDKLQQDV
EDAKDKLDAAKRKQADGLMEDEDEEVPTDEIIERMEERLEAAQNQQKRLFLIIFQRFIMI
LTDHLAKCEGNGIDYNTPWYKWVIERLQQIFLLHHELVFRYISTLESLLFTSDIDFHILE
IFQQFCALRS
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggcgacgaagagattcaagtgatgaggaagaagtgggtcattctgcaagaaaa
cgcagacgtggatcagaaaatattgacatagaggaaagactggaatctcttattacaaga
gttggtgaaaagagtacttcatccttagaaagtaatttggaaggactagcaagtgttttg
gaggcagatcttcaaaattacaaaaccaaaatactaagaattttatgctcatgtgttgtc
aaactacctgagaagatggctgtgtatactactctgattgggctccttaatgctaagaac
tacaactgtggtggagagtttgttgaaatgcttgttcgaaatcttaaagaggctttgaag
acaggggaatatgacaacgcaaaattgatcgtccgctttattgctgattgtgtcaactgt
catgtgattgttgctggttccctcctctccatgttcgacaacttcatagaggtcaccctg
gaggacaacattccacaggttcgatcagattggtatgtgtatgcagtgatggcagctctc
ccctgggttgctaaagagttacatgagaagaaggaagctgaatttaacaagctcctgtcg
accatcgaaaattacatcagtaagagacagaagatccacgtcccttccctcagagtgtgg
acctcagatttcccacaccctcaggaagagtatttggactgcctgtgggcccaaattaag
aatctaaaggccaacaaatggtcagagaaacagatagtgcggccttacctggcttttgat
ggagtgttatgtgaggcactacagcacaccctccctcaaattataccaccctcacacaac
gaggaaaccacttatcccctccccagggtcattttccggatgtttgactacacagatgtc
ccagagggtccagtattgccgggcagtcactctattgagagatacttgatagaagaacag
attgacagaattctgtgtacaaactacgtagagcgcaaggactgtgctgcagcattgctc
agttttccttcaaagaacaagatacccttgaattacatgatagtggaggtgatgttttcc
cagctgttcctgctgccagtgcccccattcctggagatcttttacggctcgctcctgata
gagctgtgtaaactgcagccgggctccatgccacaagtcctagctcaagccacagaaatg
ttgtatgaaagaattgacaccatgaatgtgacttgtattgaaaggtttgccaactggttc
gcgtatcatctgagtaatttccagtttcgatggagctgggatgactggtcaacatgttgc
cagatggacccggaattacccaaacccaagtttgtcaaggaggtgctgctgaaggccatg
agattatcataccaccagcgaatggtagagacagttccagaaggcttcgaagctttgatc
cccgaaaagccccattccgagtttaaatatgagaaggagggtgcagggtcaatgccaggg
accatggtagcccaccagctgatctcctccattaagtccaaatgtactccagaggaagcc
atggtgttactcaaagatctccccaacccactcagtgatgaggagagtgacccaacctac
catccactaagaatcgatgtctttgtctcagtcttgcttcatcttggcaacaaatctttc
agtcactcatttgcagccatagctaaatttcatcacattttgaagcttctagcagataca
gaagaaggacagatttggttattacgaactatgtttgaggtctggagctcacatcagcag
atgatggtggtgctcgtggacaagcttttaaagacccagatcgtggagccctcagctgtg
gccaactggttattctccagcgagatgcagccggagtttacaaaattctatgtgtgggag
ataatgcacgccacaataaagaagatgagtaagcaggtggacaaactacaacaagacgtg
gaggacgctaaggacaaattggacgcagcaaagagaaagcaagcggatggtttgatggaa
gatgaagatgaggaagtccctacagatgaaatcatagagaggatggaagagaggttggaa
gcagcccagaaccaacagaaacgcctgtttctgatcatcttccagaggtttataatgatt
ctgacggaccatttggcaaagtgtgaaggaaatggtattgattacaacacaccatggtat
aaatgggtaatagaaagactgcaacaaatatttttactgcaccatgaactggtttttagg
tacatcagcaccctggaatctctcctcttcactagtgacattgactttcacattctggag
attttccaacagttctgtgctttgcgttcataa
DBGET
integrated database retrieval system
