Crassostrea virginica (eastern oyster): 111128966
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Entry
111128966 CDS
T09197
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1-like isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvn03021
]
111128966
03036 Chromosome and associated proteins [BR:
cvn03036
]
111128966
Transcription machinery [BR:
cvn03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
111128966
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
111128966
SLIK complex
111128966
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
Helicase_C
CHD1-like_C
Chromo
ResIII
HDA2-3
DEAD
Myb_DNA-binding
Motif
Other DBs
NCBI-GeneID:
111128966
NCBI-ProteinID:
XP_022330655
UniProt:
A0A8B8DS25
LinkDB
All DBs
Position
4:57019940..57042769
Genome browser
AA seq
1820 aa
AA seq
DB search
MSKPSIEDTADFDSPLFGPLSNDKSPKACSSTKEKKDPVKKEIENNGSGSGSDSGNSSSG
SSSDESDSESGSRSGSNSDSSSSESDDSKSDERSERKTVSNLDDDSQDTQSTSLSSKRGR
PRKSSINDIKQILREMSDDPDLLGLRRSGRAKKEPVRYNAMGESDTEDRPRKRKGGRKGS
EDWRASDSSSDASSDDYKPSARALSRSGSRRTLRAAPPRRGRQTTSNLSESEGSASEEDT
RSSYRAYSKKIRRDYTTRRKGSKSKVSYKEDSDDQTDSDDLIEVTQDQQEAEEEDDNKEI
IEKVLDDRIGRPAATGSKTTIYNVQDNGDPNDGMDPGKEDTEKQFLIKWKNWAHIHNTWE
SYKTLKEQKVHGLKKLDNYIKKQEEIREWKDQASPEDIDYFECQQEMVQELYQQHMHVER
IIAHSNQKMANENNGYPDYLCKWQGLPYSECTWEEGELVSRKFQTLVDEYNVRNKSQRTP
TPAKFCKALRYRPKFTPLKNQPSFLGGVDNLVLRDYQLDGVNWLMHSWSKENSVILADEM
GLGKTIQTIGFLSILYNTFQVYGPNLLVVPLSTIAAWQREFKLWAPEMNVVIYLGDIISR
NKLREHEWCHSGNKRLKFNVLCTTYEILLKDKSFLGSVNWTTLIVDEAHRLKNDDSLLYK
TLFEFNSNHRLLITGTPLQNSLKELWALLHFIMPEKFYKWVDFEEKHSSAQKTGFVNLHK
ELESFLLRRVKKDVEKSLPAKTEQILRVEMSSIQKQYYRWILTKNYKALSKGLKGNVSSF
VNIIMELKKCCNHAQLVRPPEEELADRLASLIKGSGKLILLDKLLLRLKESGHRVLIFSQ
MVRMLDILGEYLQMRHFQYQRLDGSVRGDLRRQAMDHFNAEGSGDFCFLLSTRAGGLGVN
LATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVSVYRLVTKNSVEEDIVERAKRKMVL
DHLVIQRMDTTGRTVLNRGIPSNNSTPFNKEELSSILKFGAEELFKENEDDEDEPQVDID
EILKRAETRDVEEQNNGVGDELLSQFKVVSFDNMEDEEIEQIPGSKTEEEDKSWDTIIPE
ADRRKIEEEEEQKRLLELNLPPRSRKSLQQPQVGDDSDENSRRKGKRNVDDDDSEEDDDD
DDDDEDQPRKRGRPKMSKTSVRGFNDSEIRRFIKSFKKFGRPMSRLDAIACDAELQEKSE
SDLQRLADVLTKGCEQAMEEVRNKTEAENNEGGKKNNRGPSFKISSVSVNAQAIIKSGQE
LEPLAEAIPADSEERKKYQLPLKVKAVHWDCEWDVEEDSNLLKGIYEYGLGSWEAIKMDP
DLQLHDKILPDGSDLKPQGKHLATRADYLLKVLKKNSSQENGGDTVSTGLGRPRKKKKGK
PKTTAEIIEKDFSDSEEDSRANFNNNSAREENSIDSFFDHKKKKKKDSGKGDRDHEDEDT
TRDSLDIRKKKKKAAKKTKQNDAMHFTAGAVPVPVALESEYSGELPPEVFSKCKEMMRPV
KRALKRLDNPDEGMSDKEQLIHTRQCLLKIGDRINECMGHYNDPEVIKQWRSFLWIFVSK
FTEFDAKKLHKLYKHAYRKREEEQEQEGGNNKSQSSEKHGNHVEKQGEGKKHKRASESGE
GEKPAKRAQHEHRPKEHKSSASVSNGPRPSASANSLIHKHSVLESSHDSNSNDRWTHASP
LARAEDQPRNRYDNSSSAYGRQQHYSERTYHGNDPRFGDSHHRFNNDRRDYSSSHAYHRD
RGDHSSSYHSHHDHHGNYRSDHRGDRRPDYGQYGHRDYGSSNRPDSSSYQSHSDRKRKGD
AVSDRRSQKDPRIHEDTNSR
NT seq
5463 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagccttcaatagaagacacagctgactttgacagtccgctctttggaccatta
agtaatgacaaaagtcctaaagcatgttcctccaccaaagagaagaaagaccctgtaaag
aaggagatagaaaacaatggtagtgggtcaggatcagactctgggaactcgagtagtggt
tctagctcagatgaaagtgactctgaatcagggtcaaggtcaggttcaaactcggacagc
tcatcatcggaatctgacgattctaaatctgatgagcgcagcgagaggaagactgtctcc
aacttagatgatgattctcaggatacacagagcaccagtttgtcttcaaagagaggacgt
ccccgcaaatccagtatcaatgacattaaacagattttgcgcgagatgtctgatgaccct
gaccttttgggacttagaaggtcaggtcgagcaaagaaggagcctgttagatacaatgct
atgggtgaaagtgacacagaggacagaccaagaaaaaggaaagggggaagaaaaggttca
gaggattggagggcttctgatagtagcagtgatgcgagtagtgatgattacaaaccttcc
gccagggctttgtccaggtctgggagtaggaggaccttgcgagcagcccctccacggcgc
ggcagacagaccactagtaatctgagtgagtctgagggctcggcaagcgaggaggacacg
aggagctcctacagagcctactccaaaaagatcagacgtgactataccacaagaaggaaa
ggttccaaaagtaaagtgagctacaaagaggactcggacgaccagaccgactcagacgac
ctgatcgaggtcacacaggatcaacaggaggccgaggaggaagacgacaacaaggagatc
atagagaaagtgctggacgaccgcatcggacgacctgcagccacaggaagcaaaaccact
atatacaatgtccaggacaacggtgaccctaatgatgggatggacccgggtaaggaagat
acagagaaacagttcctgatcaagtggaagaactgggcgcacatccacaacacctgggag
tcgtacaaaaccctgaaggaacagaaggtccacggactgaagaagctcgacaactacatt
aagaagcaggaggagatcagagagtggaaagaccaggcctcacctgaagatattgactac
tttgaatgtcagcaggagatggtgcaggagctctatcagcagcacatgcatgtggagaga
attattgctcactcaaaccaaaaaatggccaatgagaacaatggttaccctgactacctg
tgtaagtggcaagggctgccctactcggagtgtacgtgggaggagggggaactggtgtcc
cgtaagttccagacgttggtggatgaatacaacgtgcggaataagtcccagcgaacgccc
actcctgccaaattctgtaaagctctacgataccgtccaaaattcacaccattgaaaaat
cagccttcgtttttgggtggggttgataatttagtcttacgagattatcagcttgatggt
gttaattggctcatgcattcatggtcaaaagaaaacagtgtgatattagctgatgaaatg
ggattgggaaagaccattcaaaccataggatttttatcaattttatataatacattccaa
gtgtatggacctaatttacttgtggtacctctgtccactattgctgcatggcagagggag
tttaaactctgggcaccagaaatgaatgttgtgatatatttaggggatattatcagtcga
aataagttacgggaacatgaatggtgtcacagcggtaacaagagattaaagtttaatgtg
ttgtgcacaacttatgaaatcctcctgaaagataagtcttttctgggcagtgtgaattgg
actacgctgattgtggatgaagctcaccgccttaagaatgacgactctctcctctacaaa
actctgtttgaatttaattccaaccacagactgctgattacgggtactcctctccagaat
tccctgaaggagctgtgggctctgctccacttcatcatgccagagaaattttacaaatgg
gtggattttgaggagaaacattcatcagctcaaaagacaggttttgttaatttacacaaa
gaactggagtccttcttgttaagacgtgtcaagaaagatgtagaaaaatctcttcctgcc
aagactgagcagatcttaagagtggaaatgtcgtcaatacaaaaacagtattacaggtgg
atattaacaaagaactacaaagcattaagtaaagggctcaagggtaacgtgtccagtttt
gtgaatatcatcatggaactgaagaagtgctgtaatcacgctcagctagtcagaccccca
gaggaagaactcgccgacagactagcatcattgatcaaaggaagtggcaaactaatattg
ctggacaaacttttactaagactcaaagaatcgggtcaccgtgttctaattttctcccag
atggtaagaatgctggacatcctcggagaatatcttcaaatgagacattttcaataccaa
agattagatggctctgtaagaggtgacttaagaaggcaggctatggaccacttcaatgct
gagggctcaggggacttctgtttcctcctttccactcgggccggaggtctcggcgtaaac
ctggccactgctgacacagtcatcatttttgacagtgactggaatcctcagaatgacctg
caggctcaggctagagctcacagaatagggcagaaaaatcaggtcagcgtatatagactg
gtaacgaagaacagtgtagaggaagatatcgtggagcgagccaaaaggaaaatggtgctg
gatcatctggtcattcagagaatggacaccaccggtcgtacggtgcttaaccgcggcatt
ccttccaacaattctactcctttcaataaagaggaactgagttccattctaaaatttggt
gctgaagaattatttaaagaaaatgaagatgatgaggatgagccacaggtggacatagat
gagatcttaaagagggcagaaaccagagacgttgaagaacaaaacaatggggtgggggat
gaactgctgtctcagtttaaagtagtcagttttgacaacatggaagacgaggaaatcgaa
caaatccccggctcaaagacagaggaagaagacaagtcctgggacaccattattcctgag
gcagacagaaggaaaatcgaggaagaggaggaacagaagagactgctagagctcaacctc
cctcctcgatcccggaagtcactgcaacagcctcaagttggtgacgactcagacgagaat
agcaggagaaaaggtaaaaggaatgttgatgatgacgacagtgaagaggacgacgatgac
gatgatgatgatgaggaccagccaaggaaacgaggaagaccaaagatgtccaagacatca
gtgcggggttttaatgattcagaaatccgtcgcttcattaaaagctttaaaaagtttggc
agaccaatgagcaggttagatgccatcgcctgtgatgcagagcttcaggagaagtcggag
agcgaccttcagaggttagcggacgtcttgactaaaggttgtgagcaggctatggaggag
gtcagaaacaaaacggaggctgagaataatgaaggaggaaagaagaacaatagaggacca
tcctttaagatttctagtgtttctgtcaatgctcaggccattatcaagtctggtcaggag
ttagagcccctggctgaagccatacctgctgacagcgaggagaggaagaagtatcagctt
ccgctgaaggtgaaggctgttcactgggactgtgaatgggacgtggaggaggactccaat
cttctgaagggcatctatgagtacggtctgggcagctgggaggccatcaaaatggacccc
gacctccaactccacgacaagattttgccagatggaagtgatctgaaacctcaagggaag
cacttggcgacaagggctgactatctactaaaggtgctaaaaaagaattccagtcaagaa
aatggaggggacactgtatctacggggctgggcagacccagaaagaagaagaagggaaag
cccaaaaccacggcagaaataattgagaaagacttcagtgattcagaggaggactcccgt
gctaattttaacaataatagtgctagagaagagaacagtattgacagtttttttgatcac
aaaaagaagaaaaagaaggacagtggaaagggagatagagatcacgaggacgaggacact
acgagggactcgttggatatcaggaagaaaaagaaaaaggcggccaagaagaccaaacag
aacgatgcaatgcatttcactgcgggggcggtgcctgtgccagtggccctggagtcagag
tatagtggggaactccctcccgaggtcttctccaagtgtaaggagatgatgcggcccgtc
aagcgagccctgaaacgtcttgacaacccggatgaggggatgtcggacaaagagcagctg
attcacactcgccagtgtctgctcaagatcggcgaccgcatcaacgagtgtatggggcat
tacaacgaccccgaggtcatcaagcagtggagaagttttctctggatctttgtatcaaag
ttcaccgagtttgatgccaagaagcttcacaagttgtacaagcatgcatacaggaaacga
gaggaggagcaggaacaggagggtggtaacaacaaatcccagtcctcagagaaacatggc
aaccatgttgagaagcagggagagggaaagaagcacaagcgtgcctccgagtcaggggaa
ggagagaagccggccaagagagctcagcacgagcacaggcccaaagagcacaaaagttct
gcctcagtaagtaacggcccccgtcctagtgccagcgccaacagcttaatacacaaacac
agtgtcctcgaatctagtcacgactccaactctaatgataggtggactcatgctagtccc
ttagcacgggctgaagatcaacctaggaataggtatgacaacagctccagtgcttatgga
cgtcagcagcattattctgagcggacttaccatggcaatgaccccaggtttggggactca
caccacagatttaacaatgatcgacgagactattcttccagtcatgcatatcatcgagat
cgaggcgatcattcatcaagctaccattctcatcatgatcaccatggtaattaccgatca
gatcaccgtggtgaccgtcgtcccgactacgggcagtatggtcaccgtgactatggcagc
agcaatcgtcctgatagtagcagttaccagtctcattcagataggaaacgcaaaggtgat
gccgtttcagatcgaagatctcagaaagaccctagaatacacgaggacactaacagccgg
taa
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