Crassostrea virginica (eastern oyster): 111129049
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Entry
111129049 CDS
T09197
Name
(RefSeq) nucleolar protein 6-like isoform X1
KO
K14544
U3 small nucleolar RNA-associated protein 22
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111129049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cvn03009
]
111129049
Ribosome biogenesis [BR:
cvn03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
111129049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nrap_D5
Nrap
Nrap_D3
Nrap_D4
Nrap_D2
Nrap_D6
Motif
Other DBs
NCBI-GeneID:
111129049
NCBI-ProteinID:
XP_022330814
UniProt:
A0A8B8DTG6
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All DBs
Position
4:complement(58189585..58203246)
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AA seq
1171 aa
AA seq
DB search
MKRKQAPVVSDERTEDHDKQSESEESLSENSDAESSHDSEANGGHSASVPPGKKVKIMKR
DLYRPPTNDELNQLKETQNLFHSSLFRLQVNELLTEIQLKEKRNQQINEAVLAVSQMIKS
LKKSVEHELQSQKWLKNIRVPIHQNPRAVKGRFQFVPPREIVTAGSYVTGTCIKPSVTVD
LVLVMPLECFQDKDFMNHRYLRKRAIYLAVIAKRLREVQGIQDLKYTYQNGNSLKPSLLL
SYQGSGSRTVCLNITAVPEEGTFKLNRFHINKSNVRRQWFLEEEEGKSSTDKVTPTPFYN
NTVLQDLTLTQNMEFLQRTLGNNTNIRDGISLLKVWLRQRELTQGFGGFSGFLISMFVAY
LISQRKINPLMSSYQVMRNVLLHLAQTDWTKDPLTLCPSFDPFQQPDPCLFYEHFSIVFV
DVTGFVNLCSDLSKGLYDRVRQEADLAVHFLEDRSVDSFSALFMTPVEFLRKFDVTLHLQ
DLSRKEVEELGLLDKYVDHGGDYIPAMKPDLLSLLCRGLGGRASLVQYRQLPVPQWDVES
LPPSHESLGSVLVGLQLNPESAFSVLDKGPPADSPEAKEFREFWGDKSELRRFKDGSVCE
AVPWTKKSLLSEKRSVCCRVVQHVLQRHVGISPEAVKCFSDQLDPLLQCSVNNNLGERYG
TGEEQHNDVIQKYDELCKLLRNLKELPLSINSIQGSAPVFRYSEVFPPLPAMCSKDHKVG
KGGRDTPQNYPKGCPDFNMSLKVICLLEGSGKWPDEKKPFNRLMAAFHIQLGESIKTQYG
LPVSVYPRHIDVVKDNYVFRVTLGYTREIALTKMIRTPEGMVKYKDNEEALNLEREIQAL
PRLTSTLHGLQQLHASFSSTVRLAKRWMAAQLLSEYVCDEAVDIITAYLYLHPAPYTPPS
TPLVGFQRFLYLVGHHDWMNSPLMVNLNEEFTAEDLEEIRARFQRERSSRAVLFLSTPFD
KHSSYWTRHWPTAPILQRLVVLARGSHSLLHSLIQAGVDNSDFKQLFRPPLEMYDLIIHL
TWKQLPRQHEAVDWEGGHLPMNRKKSVPSTSDPANTLQHFPVYDYDPASLYLNELKEMYG
DFALFFYDKYGGKYIAVLWKPTAFTPKDFKVSHLAGRTVKTTDFGEGDITVVPNVEAIID
DFRILGRGLVSNIQIQCKAHLPSDTLTTHNA
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaaaacaggctccagttgtaagtgatgagaggacagaggatcatgacaaacaa
tctgagtcagaagaaagtttatcagaaaacagtgatgctgaaagctcacatgactctgaa
gcaaatggtggccactctgccagtgtacctcctggtaaaaaggttaaaatcatgaaaagg
gacctctaccgaccccccaccaatgacgaactaaatcagctgaaggaaacccagaatctc
ttccactcaagtctctttaggcttcaggtgaatgagttgctgactgagatacagctgaag
gagaaacggaaccagcagatcaatgaggcagtgttagctgtgtcacagatgatcaagtca
ctcaaaaagagtgtggagcatgagttacagtcccaaaagtggctgaagaacatccgagtc
cccattcaccagaacccaagagcagtgaaggggaggttccagtttgtgccccccagagag
attgtgacagcagggagctacgtgacagggacgtgtatcaaacccagcgtgactgtcgat
ctggtcctagtcatgccactggagtgctttcaggacaaagactttatgaaccaccgttat
ttgaggaagagagcaatttatttagcggtgatcgccaaacgattacgtgaggttcaggga
atacaagatctgaagtatacttaccagaatggcaactcactgaaaccgagtctcttgctc
agttaccaaggcagtgggagccgcacagtctgtctgaacatcaccgctgttccagaggag
gggacattcaaactgaaccgattccacattaacaagagtaatgtccgcaggcaatggttc
ctggaagaggaggaaggcaaatctagtacagacaaggtgacgcccactccgttctacaac
aacactgtccttcaggatttgaccttgacacagaacatggaatttttacagaggacgctg
ggaaacaacaccaatatccgtgacggaatttccctcctcaaagtctggctacgacagagg
gagcttactcagggttttgggggtttctccggattcctgatatccatgtttgtggcttat
ttaatcagccagcgtaagatcaaccccctgatgagcagctaccaggtgatgaggaatgtc
ctcctacatctagcccagacggactggacaaaggaccccctgacactgtgtccttcattt
gatcctttccaacagccggacccctgcttgttttacgaacacttcagcatcgttttcgta
gacgtcactggattcgttaacctgtgttctgatctcagtaaaggactgtacgatagggtg
cgtcaggaagcagacctggctgttcacttcctggaggaccggtctgtcgacagtttctct
gccctgtttatgaccccagtggaattcctcaggaagtttgatgtcacattgcatctgcag
gatttatccaggaaagaggtggaggagcttggattgttggataaatacgtggaccatggg
ggcgactatatccctgccatgaagccagatctcttgtccctgctctgtcgtggtctaggg
ggcagggcctccttagtacagtatagacagctcccagtgcctcagtgggatgtggaaagc
ctaccccccagtcatgagtccctagggtcagtcctggttggactacagttgaacccggag
tcggccttcagtgtgctggacaagggaccgccagcagattctcctgaggctaaagagttt
agggagttctggggtgacaagtcggagcttcgtcgatttaaggacggcagcgtatgcgaa
gctgttccatggaccaagaaatccttgctatcagaaaaacgcagcgtgtgttgtcgagtg
gttcaacacgtactccagagacatgttggaatcagtcccgaggcggtgaaatgttttagt
gatcagttagacccattgttacaatgttcagtgaacaataacctgggagagaggtacgga
acaggggaggagcagcataacgatgtgattcagaagtatgatgagctgtgtaaactcctg
aggaacctcaaggaactgcccttgtccatcaactccatacagggctcagccccagtgttc
agatactcagaggttttccccccattaccagccatgtgtagtaaggatcataaggtgggg
aaagggggtcgggacacaccccagaattaccccaagggctgcccggacttcaacatgtcc
ctcaaagtgatctgtttgctggagggtagtggaaaatggccggacgagaagaagccgttt
aacagattaatggcagccttccacattcagctaggggagtcaatcaagacccagtatgga
ttacccgtgtctgtgtatccacgacacatagatgttgtcaaggataactatgtgtttcgc
gtcaccctgggctacacccgtgagatcgccctcactaagatgatcaggacaccagagggg
atggtcaagtacaaagacaatgaggaagctttgaacctggagcgagagattcaggctctt
ccccgcttgaccagcacgctacacggacttcaacaattgcatgcctcatttagttccaca
gtgaggctggccaagcggtggatggctgcccagctcctgtctgagtatgtgtgcgatgag
gctgtggatatcattacagcctacctgtatctccaccccgcaccctacacacctcccagt
acccccttggtcggctttcagcggttcctgtacctagtgggtcaccatgactggatgaac
agtcctctgatggtcaacctcaatgaggagttcacagctgaggacttggaggagattcgg
gctcggttccagagggagcgttcctcgcgcgccgtcctgttcctgtctacaccatttgac
aaacacagctcctattggacgagacactggcccactgcgccgattctacagagactggtg
gtcctagcacggggctctcattccctactacacagcctgatacaagcaggagtagacaac
tctgacttcaagcaattgttccgacctcctttagagatgtatgaccttatcatacacttg
acatggaaacagttgccacggcaacatgaagcggttgactgggagggcggtcatcttcca
atgaatagaaagaagtctgttccgtcaacctctgaccctgccaacactctccagcacttt
ccagtgtatgactacgaccctgcctctctgtacctcaatgaactcaaggagatgtatgga
gatttcgccctgttcttctatgacaaatatggagggaagtacatagcagtgttatggaaa
ccaacagccttcaccccaaaagatttcaaggtgtcccatttagcagggaggacagtaaaa
accacagattttggtgaaggagacattactgtggtgcctaatgtggaggccattattgat
gactttagaattctgggaagaggactggtgtctaacatacaaatacaatgcaaagcacat
cttccaagtgatactctcactacacataacgcatag
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