Crassostrea virginica (eastern oyster): 111129189
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Entry
111129189 CDS
T09197
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn04137
Mitophagy - animal
cvn04140
Autophagy - animal
cvn04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
111129189
04137 Mitophagy - animal
111129189
04148 Efferocytosis
111129189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cvn03000
]
111129189
Transcription factors [BR:
cvn03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
111129189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_3
PAS_11
bHLH_HIF1A
PAS
PAS_9
HIF-1
HLH
PAS_4
HVO_2928_N
Autophagy_act_C
Motif
Other DBs
NCBI-GeneID:
111129189
NCBI-ProteinID:
XP_022331130
UniProt:
A0A8B8DTB3
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Position
4:complement(19050224..19074344)
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AA seq
701 aa
AA seq
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MSSTTKRRNSEKRKEKSRDAARCRRGRETEIFSELAEQIPQYSGSHGQLDKASIMRLAIS
HLKISKIMETQRNNRHAPCEEFDPLYSRALDGFVLILSNEGDLIFISESVSKYLGIQQVD
LVGQSIYEFVHPCDHEDITEIFHSNGRDKKKKSSDCYHTFFVRMKCTLTNKGKNVNLKSA
TYKVIKFSGKLVKDEVKREAGGDGSAPYLLLIGEPIPHPSNIEVPLDRMTFLSRHNMDMK
FTYCDDRVKDLLGYNCSDLINKSLFDYHHAMDSEVIDHSYRNLVAKGQVMTGQYRFLAKT
GGHVWMITQGTVIYNSRTQKPQCIVCVHYVLSGIENPSLILSTSQQSYSQQVPMLPLEVK
LSTEDVFKPRPDNVKVDEFYFPPGTKIPSMKIDESVDLTHLAPTSGDTCVPLIGDKCIQF
SDQPMPALKEEPDMFSTRVCSHPTQSPLATPPSVSPAPISPMDYTTPLTPSVVDAMDKFF
SAVETYPRNDQANADLDMDMRAPYIPMNKKEDFSLLPPTSDALFSINSDFNPGLFGRTES
VFVPKDKLYQDPPKEPRMSIRDMLVGSTAVASIEQPPDTFNLQLKRPLDMNSLEKGPPVK
KRFIQDYQEVPKKHSVLMSLLVNGEDPPTGYSVVGRKPPQQPPLPQAKAYYPLLGKGSHS
GGKQIAALPQDEEVMETPDLLLQNPDLLAALELFLPNSELM
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgactacgaaaagaaggaactcggagaagaggaaggagaagtcccgcgatgcg
gcgcgatgtcgcagggggcgggagacggagattttctcggagctggcggagcagattccg
cagtacagtggcagtcacggtcagctggacaaggcgtccatcatgaggctagccatcagc
cacctgaagatcagcaagatcatggagacccagaggaacaataggcacgctccgtgtgag
gagtttgatccgctgtacagcagagccttggacggattcgtcctcattctctccaacgaa
ggagacctcatctttatctccgagagtgtctccaagtacctgggtatacaacaggtggac
ctagtggggcagtctatctacgagtttgtccatccctgtgaccacgaggacatcactgaa
atcttccacagcaacggacgcgacaagaagaagaagtcctcagactgctatcatactttc
tttgttcgaatgaagtgcaccctgaccaacaagggaaagaatgtcaacctcaaatctgct
acttacaaggtcattaagttttctgggaagctggtcaaggatgaagtgaagagggaggct
gggggagatgggagtgccccctatctgctgctgatcggggaacccatcccacacccctcc
aacatagaggtccccctcgacaggatgaccttcctcagcagacacaatatggacatgaaa
ttcacctactgtgatgacagggtaaaggacttactgggctacaactgctccgatctgatc
aacaaatccttgtttgactaccaccatgctatggacagtgaagtcatcgaccattcgtat
cggaacttggttgctaagggacaagtgatgaccggtcagtatcgattccttgccaagaca
gggggacacgtatggatgatcacccaggggactgtgatctacaacagccgtacccagaaa
ccccagtgtatcgtgtgtgtccactatgtcctcagtggaattgagaaccccagcttgatt
ttgtccacttcccaacagtcttacagtcagcaggtacccatgctgcctctagaggtcaaa
ctgagcaccgaggacgtgttcaagcctcgccccgacaatgtcaaagtcgacgagttctac
ttcccaccgggcaccaagatcccctcgatgaagattgatgagagcgtggatctgactcac
ctggctcccacctccggggacacctgtgttcccttgattggagataagtgcatccagttc
tcggatcagccaatgcctgccctcaaagaagagccggacatgttcagcacgcgggtctgc
tcccaccccacccagtcccccctggccactcccccgtctgtgagcccggcccccatcagc
cccatggactacaccacgcccctcacccccagcgtggtggacgccatggacaagttcttt
tcggcggtggagacctaccccagaaacgaccaggccaatgcggacctggacatggacatg
agggccccttacatccccatgaacaagaaggaggacttcagcctgctgccacccaccagt
gacgccctgttctccatcaacagcgacttcaaccccgggctgtttggtcgcaccgagtct
gtgtttgtccccaaggacaagctgtaccaggatcctcccaaggaaccacgcatgagtatc
cgcgacatgttggtggggagcaccgcggtcgccagcatagagcagccgcccgacaccttc
aacctacagctgaagcgccccctggatatgaacagtctggagaaggggccccctgtcaag
aaacgcttcatccaggactaccaggaggtacccaaaaaacacagtgttctaatgagtctc
ctggtcaacggcgaggacccgcccacagggtactccgtggtggggcgcaaaccaccgcag
cagccgccgcttccacaggccaaagcctattatccactcttggggaaggggagccactct
ggtggtaaacagatcgccgcactgccgcaggacgaggaggttatggaaactccggatctt
ttgctgcagaatccggatctgttggctgctctggagttgttcctgcccaattcggagctg
atgtga
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