Crassostrea virginica (eastern oyster): 111129335
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Entry
111129335 CDS
T09197
Name
(RefSeq) protein Smaug homolog 1-like
KO
K27396
protein Smaug
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111129335
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111129335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHAT_SMAUG
SAM_1
Vts1
PHAT
DUF4508
SAM_2
Motif
Other DBs
NCBI-GeneID:
111129335
NCBI-ProteinID:
XP_022331354
UniProt:
A0A8B8DTY5
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Position
4:complement(16679379..16692530)
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AA seq
692 aa
AA seq
DB search
MKSNTLFRDQVNYLNSWFEKWSECEKTVVVYGLLKHLNATQIKFLAQALQQKDCSEAEVL
EAEANNPAYIHQLRAEPQEIAVQKLLAHFPLLKVGNVKAKTEYLALIPQILTYSNENGAY
VEESRQLLSYSVIHPALTSEEHAHFKWWISHLNERFTSNYPSHSQHHSPVTNHKGDHSEF
TQCVPRPVGNSRLNGSYYYRDPTPEESSTSQNNLMLSAENLPNLYNVSNRDSMNSLHNHQ
GHHPLTATLSAPATVNVIVSSSQHTTLSNQENMNPVNKHQLLCRKPSLHPHHGPITPMSH
VSDWLKNSESEVPYHRGRSHSLTFEQGQGGHPPLSPQSSITSSGSSDTHQDMEPMRNSFL
EEGSGMRDVPTWLKSLRLHKYAYLFQQMTYEEMLTVSEDWLETQNVTKGARHKIVLSLSK
LKERQDLLRSMEKDIVDGGSISTIKSVLSEMKSMLNTPIKAFSTEDSSQIPSSPPPSPVS
EDGYSIPEGDVSGQFTRVMWKACTQLLVTTPFDDECFNLFIQVIDKCLNHEAFSPRQKKR
LASWKHEAQRNWQPKYIDRRKQGFGGKQMWGNSLGMQRSLRFQKPGPQWSFGTKRSILGG
TTSGHAPLTRNSSLNPSMFSRQGPLETQKPPVTRTQSAPLRSPHQLGFNVTGCEQIAGEN
LENYAQLDSLCLSVTEHALGSSLETNEKGTTY
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgaaatccaacactttgtttcgagaccaggtgaattatctgaacagttggtttgagaaa
tggagtgaatgtgagaaaacggtcgttgtgtatggcctgttgaagcacctgaatgccact
cagatcaagttcctggcccaggcgctgcagcagaaggactgctccgaagcagaggtgcta
gaggcagaggctaataacccagcatacatacatcaactgcgtgctgagccacaggaaatt
gctgtacaaaagctgttggcccattttccattattgaaagtaggcaatgtcaaagccaaa
acagaatatttagctctcattcctcaaattctgacttactcaaatgaaaatggtgcttat
gtggaagagagtaggcagttactgtcctactccgtcatccaccctgcacttaccagtgag
gagcatgcccatttcaagtggtggatctctcatcttaacgagcggtttacttccaattat
ccttctcattcacaacatcattctcctgttacaaaccacaaaggggatcattcagagttc
acccagtgtgtgccgcgaccggttgggaatagccggctgaacggttcctactactacagg
gatcccacccctgaggaatcctcgacgtcccagaacaacctgatgttgtcagcagagaac
ctgcccaatctgtacaatgtcagcaaccgtgatagcatgaactctctccacaaccaccag
ggacatcatcccctaactgccaccctgtctgcccccgcaacggtcaatgtgattgtttcc
tcatctcagcacactaccctctccaatcaagaaaatatgaacccagtgaataagcaccaa
cttctttgtcgtaaaccatcattgcacccccatcatggtcctataaccccaatgagccat
gtcagtgactggttaaaaaacagtgagagtgaagtgccttaccaccggggacggtcacac
tccctgacctttgagcagggccagggaggccacccccctctctcccctcagagcagtatt
acctcgtctgggagcagtgacacccaccaagacatggagcccatgaggaacagcttcctg
gaggagggcagtggcatgagagatgtacccacatggttgaaaagtttgaggcttcataaa
tatgcctacttgttccaacagatgacctatgaggaaatgttgactgtctctgaggactgg
ctggaaacacagaatgtgacaaaaggggctcgccacaagattgttctgagccttagtaaa
ctaaaggagagacaggatttgttacgatccatggaaaaggatattgttgatgggggctct
atctctaccattaaatcagtgctatcagaaatgaagagtatgctaaatacaccaataaag
gccttctccacagaggactcctcccagatcccctcctccccacccccctccccggtctct
gaggacggatactcgattcctgagggtgatgtctcagggcagttcactcgggtcatgtgg
aaagcttgtacccagttactggtaacaaccccttttgatgacgagtgctttaatctgttt
atccaagtcattgacaagtgcttaaaccatgaggctttctctccccgccagaaaaagagg
ttagcttcatggaaacacgaggcccagagaaattggcagcccaagtatatagacagaagg
aaacaagggtttggaggaaaacagatgtgggggaatagtttagggatgcagagatctctg
cggtttcagaagcctggtccacagtggagttttggcacaaagaggtcaattctggggggt
actacaagtggccatgctcccctaacacggaacagttccctcaacccatctatgttctca
cgccaagggcctttagagacacagaaacctccggtgactcgcactcagtctgcccccttg
agatctccacatcagttgggttttaatgttacaggttgtgaacaaattgccggtgagaat
cttgagaactatgcccagttggactccctgtgtttgagtgttacggagcatgcactgggc
agcagtctagaaacaaatgagaaggggacaacatattag
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