Crassostrea virginica (eastern oyster): 111129366
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Entry
111129366 CDS
T09197
Name
(RefSeq) putative elongator complex protein 1
KO
K11373
elongator complex protein 1
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cvn03016
]
111129366
Transfer RNA biogenesis [BR:
cvn03016
]
Eukaryotic type
tRNA modification factors
Elongator complex
111129366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_ELP1_1st
A-sol_ELP1
HB_ELP1
Beta-prop_ELP1_2nd
TPR_ELP1
Beta-prop_EML_2
ANAPC4_WD40
Beta-prop_WDR19_1st
WD40_CDC20-Fz
TPR_GEMI5
Beta-prop_WDR35_TULP_N
Se-cys_synth_N
BAR
WD40_WDHD1_1st
Beta-prop_NUP159_NUP214
TraI_C
EIF3I
Motif
Other DBs
NCBI-GeneID:
111129366
NCBI-ProteinID:
XP_022331417
UniProt:
A0A8B8DT46
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Position
4:complement(29181168..29198673)
Genome browser
AA seq
1323 aa
AA seq
DB search
MRNLELLSYRHLDCGEDFQGAEAVCIDYDSGNVFAASPSTIVGLAPQSEQVIGVAKLDQC
DELPPDGINKIVGMEFLPDQQSVCVASNTGSVLLWNVSSGQIESVGDVSSGIRAMSWSPD
QEILVVATGQDTLIMMTREFDPVTEKPLHPDNFGAEEFVNVGWGKKETQFHGSIGKEAAK
QKSEVVQAALPWDDQQPRISWRGDGQCFVVSSICPNTGARKLRVWNRECEHQSTSENVDG
VEQALGWKPSGSLIASTQRRPNKHDVVFFERNGLRHGEFSLPFGVKDVKVRELLWNTDSS
VLALWCEDLIQEGTNTTPKSYIQLWSMSNYHWYLKQSIPFGEDRVSSLTWDPEHAYRLHV
LCQQGKYSQYTWHWTTHSSNNALVAVIDGSKLLMTPFQQLVVPPPMSAYYLQLPASINLV
TFCCHGNSDDALLSLDDGRIAVYRFDNTDTKDDSVKLDGAGGNSFKTCCNTPSLQGIYRI
SGLSQASQLLQVVHHVVWYTPELVLFCCVDPKRSQQSVLYSCKFDGENLDVKSQTLVDGS
VYKMCCDSESKDFVLALQLTDGFIMKYDIGAEMILPWELNSGEELSLPIPCQQMALTTIG
EQRVVLGLTSRYRFYVNNTEVASNCTSFTIHKEYLLLTTLTHTVRCICRKTKVEVLPSLS
DGKAHPFDESIRRVERGSRIVTVVPDDTKLVLQMPRGNLETIHPRALVLSAVRKSLDELR
FLDAMTAMRRHRINMNLIYDHDPDKFRTNVRHFVQQINNVSHINLFLTDLQEEDVTRTMY
TAAYNRSQLVEESEGSCKVDTVCDVLRTALIEEDENKYILSILTSYVKKSNPELEEALLL
VRSLRDNPNKNAVISPADALKYLLFLVDVNEMFDVALGTYDFDLVLMVAEKSQKDPKEYI
PFLNNLRRLEGAYQYYTIDKYLKRYSRALQNISKCSDHFEECLTLISDHHLYKEALSLFD
IASKEYKEIAKLYGKHLISKKKLEEAGLVYVKAEEWELALDAFKSCSNWRQAFCMAATLK
YNRENQVDLAQKLANQLRNNKKYVDAAIVLEEYASDIEEAIVCLIEGCQWEEALRRMYKH
SRTDFIETNLKPAMMENYEGQMESLEALRIDFDKYRKRLKVVKEEKERSRLEFLENGGVN
DADADLFSDASSATGESIQSSKYSSSQASNFSKSTGRSSRNRRKAEQKKWKLKEGSPYED
FALIAALSKIITAVDIMRDEVNGLVKVLVQFNNDKEASKLQETFGSFLNLIDTSVPSIWL
DEAEDEGESVVLGPHATANTIAQAVQKGQTLSTKEKLDPIIKNAPPLHKDIKWKLSMLEE
TKS
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
atgagaaacctagagctactctcatataggcatctggattgtggtgaggactttcaagga
gcagaggcagtttgtatagattatgactcgggaaatgtatttgctgcttctccatcaacc
attgtggggctcgcccctcagagtgagcaggtcattggagtagccaaacttgatcagtgc
gatgaactgcctcctgatggcataaacaagattgtgggaatggagtttcttcctgaccag
cagtctgtttgtgttgcctcgaatacaggaagtgtcctgctatggaatgtgtcgtctgga
cagattgagagtgttggtgatgtcagtagcggcattagagccatgtcatggagtccagat
caggagatcttagtcgtagcaacaggtcaagatacattgatcatgatgacaagagaattt
gacccagtcacagaaaagcctcttcatcctgataactttggagctgaggaatttgtgaat
gttggctggggaaagaaggagacacaatttcatggttcaataggaaaagaggcagccaag
cagaaaagcgaggtagttcaagcagcactgccctgggatgatcaacaaccccgaataagt
tggcgaggagatggacagtgttttgttgtcagttcaatctgtccaaacactggagctaga
aagctgcgagtctggaatcgtgagtgcgagcatcagtcaaccagtgaaaatgtggatgga
gttgaacaggcactcggctggaaaccatctgggagcttgattgcatcaactcagagaaga
cctaacaaacatgatgtggtgttctttgaaaggaatggcctccgtcatggagaattttct
ttgccttttggtgttaaagatgtcaaggtgagagaactcctatggaacacagattcaagt
gtcttagctctctggtgtgaagatctgattcaagaaggaacaaatactacccccaaatca
tacattcagctatggagcatgagcaactatcactggtatttaaaacaaagtatcccattt
ggagaggacagagttagctcccttacatgggacccagaacacgcttatcgtctacatgtc
ttgtgtcagcaggggaagtattcacagtatacttggcactggaccacacacagcagtaac
aatgctcttgttgccgtcattgatggaagtaaacttttgatgacaccttttcaacaactc
gttgtccctccgccaatgtcagcttattatctacagttgcctgcttcaatcaatcttgta
acattttgttgtcatggaaactcagatgatgctctcctgtcgctggacgatgggaggatt
gctgtgtataggtttgacaacactgacaccaaagatgatagtgtcaaattagatggagca
ggcggcaacagttttaagacatgctgcaacactccaagtcttcaaggaatttataggata
tcaggattatctcaagcctcccagttgttgcaggtggttcatcacgttgtttggtacacc
cctgaactggttctcttttgttgtgtggatcccaagagatctcagcagtcagttctttat
tcctgtaaatttgatggagagaatctagatgtcaagtcacagacattagtggatggctcg
gtatacaagatgtgctgtgacagcgagtcaaaggatttcgtgctagcccttcaactcact
gatggattcattatgaagtatgatattggtgcagaaatgattttgccctgggaattgaat
tctggagaagagttgtctctcccgataccctgccaacagatggctctaactaccattgga
gaacagagagttgtgttgggactgaccagtagatacaggttttatgtgaacaacacagag
gttgcctcaaactgcacctctttcactatccacaaggagtatttgcttctaacaacactg
acccacacagtgcgatgcatctgtaggaaaaccaaagtggaggtgttaccatcactttct
gatgggaaggctcatccattcgatgagagtatacgacgagtagagaggggatctagaatt
gttacggtggttccagatgacacaaaactggtgctacagatgccacgggggaatctagag
acaattcacccgcgcgccttggttttgtcagcggtcagaaagagtctggatgaattacgc
ttcttagatgcgatgacagcaatgaggaggcatcggatcaatatgaatctgatttatgat
catgatcctgacaagttcaggaccaatgtcagacattttgttcagcagataaataatgtc
agccacatcaatcttttcctgacagatttacaggaagaagatgtcacacggaccatgtat
acggcagcttacaatcggtcacaacttgtggaggaatcggaagggagctgtaaagtagac
actgtgtgtgatgtccttagaacagcccttattgaggaagatgaaaacaagtacatttta
agcatccttacctcttatgtgaagaaatctaaccctgaattagaggaagccctcctcctt
gtcagatctctcagagataaccccaacaagaatgcggtgattagtcctgctgatgcattg
aagtaccttttgtttctggtggatgtcaatgaaatgtttgatgttgcactgggaacatat
gactttgatttggttctcatggtggctgaaaaatctcaaaaggatcctaaggaatacata
ccctttctgaacaatcttcggaggttggagggagcctatcagtattatactatcgacaag
tatctaaagcgatactcccgagctctccagaatatcagcaaatgctctgaccactttgag
gaatgcctgactttgatcagtgatcatcacttgtacaaagaagctctttctctatttgac
attgcatccaaagaatacaaggaaattgcaaagctttatgggaaacacttaatcagtaag
aagaagctggaggaggcaggtcttgtgtatgtgaaggctgaggaatgggagctagctctg
gatgcattcaagtcctgcagtaactggaggcaggctttttgtatggctgccacgttaaag
tacaacagggaaaatcaagtggatttggctcaaaagttagccaatcaattacggaacaat
aagaaatatgtggatgcagccatagttttagaggaatatgccagtgatatagaggaagcc
attgtatgtctgattgaaggatgccagtgggaggaggccctcagaaggatgtacaagcac
agcagaactgacttcattgagacaaacctgaagccagccatgatggagaattatgaaggt
caaatggaatccttggaggctctacgtattgattttgataaatacagaaagaggttgaag
gtggtcaaggaggagaaagaaaggtcaaggttggagtttttggagaatgggggtgtcaat
gatgccgatgctgacctgttctctgatgccagcagtgcaacaggggagagcatccagtcc
tccaagtattccagctctcaggcctccaacttcagcaagtccacaggtcgttcatcaaga
aaccgaagaaaagccgagcagaaaaaatggaaactgaaggaagggagtccctatgaagac
tttgctttgattgcagcactctccaaaatcataactgcagttgatatcatgagagatgag
gtgaatggtctagtgaaagttttggttcagtttaacaatgataaggaagccagcaaatta
caggagacttttggaagctttttgaatttgattgacacatctgttccttcaatatggttg
gatgaggcagaagatgagggagaatctgtagttctcggtccccatgccacagccaacacc
atagctcaggcagtgcagaaaggacaaaccttatcaacaaaagagaaactagatcccatc
attaaaaatgcacctcctctgcataaagacattaaatggaaactgagcatgttggaagag
acgaaatcatga
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