Crassostrea virginica (eastern oyster): 111129524
Help
Entry
111129524 CDS
T09197
Name
(RefSeq) endoribonuclease Dicer-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cvn03036
]
111129524
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
111129524
microRNA pathway
RISC loading complex
111129524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Ribonuclease_3
Dicer_PBD
Dicer_dimer
Ribonucleas_3_3
PAZ
Helicase_C
dsrm
Motif
Other DBs
NCBI-GeneID:
111129524
NCBI-ProteinID:
XP_022331683
UniProt:
A0A8B8DVK6
LinkDB
All DBs
Position
4:15036330..15052449
Genome browser
AA seq
1909 aa
AA seq
DB search
MVRTESAPLKRLPRHLRNEDIPTHTFTPRTYQVELLDAALQRNTIICLGSSAGNTFISVM
LLKEFSSKLRKQLPSGGKRSVVCLSSDDSIQAISQVIKHHSDLNVTPILELPEDSSKLNS
VINDNQILVTKPSVFSDLLLKTYLLPNQLNLVILENCHFILQEDHPYQSIMKIIHSGVPK
EDAVRILGLTSSFISQKCHDPEDLEHVIRSLEDRLGARAETATLVIAERYGIRPKEFLTF
CDNYEDVTGTLTLLDDVLSSALEFLNDCNMEDEEDDDRDPKEIPIFAFSECLNILYSLGP
WCASCIASMFITQIEKVDKHETIPVHKKFLKYCLTQLRIVTTLFEQNFTPNYDVEELLQY
STPRVYKLVDHLRKYKPEYDFMIVSTGGDMDDFLGKEDQGSQNGDSDGDESEMSDASVIM
SDDESSNREYKGNVVHIAVKKEPDCGNLQKAADPLNADGEKYLCGIVFVEHRYVALAINK
FLEEVCSWDENLCFVKSQHLTGQGLKNGKSKKGNWKKQEEVLRKFRLQDLNLLISTTVLE
DGIDVPKCNLIVKFDPPRNYKSYSQSKGRARARDSEYVILVEENKRNAFMKDYDVFKGIE
GVLVGRTKSDEESDEDDNLFEDKSTSLPPYIPNQDNPQICVTMDTAIAFVNRYCAKLPSD
AFTHLTPKCTLQEIPREGGSLYRATLSLPINSPYKHFVQGEAMPTKNLAKRAVALKLCES
LHQAGELDDQLNPVGKEVFTLEEEEEEEEEETTEVEEGEDYCGDGRPGTTKRKQYYFKRL
STSLVQSHPTTEPCLLYNISLRLSKPISDEQNTRGRKICAPEDTPRGFGILTSKDIPQVP
TFPVYTRSGEVTATIDLLSSEFSVSSEELRRLRDFHRFTFTSVLRLEKDPMEFCPEESDL
GYLLVPLTKDDDGNAVIDWPFIMEVENSKSHVRRNIYDSKREQFVFSKEEYEDAVVMPSY
RNVDQPQHFYVAEIRSDLNPSSPFPSPELYKTFSAYYTTKYGLTITNLDQPLLDVDHTSA
RLNLLTPRYMNQKGVALPTSSAETKKARRENLQQKQILVPELCEIHVFPASLWRKAVCLP
TILYRLNYLLVADEIRVKIAEGSGIGLVNLEEGFRFPPLDFGFDPKEEEADVSFVCNSTV
DNDDSIDEANGKLVNACDLTSHSQNNCDNVGSFSAEVDEFDRKKAKVCDKKQNLNAAFQN
DKAANGICDIQNKMSNDQNGFSDNDEEWENTLQDQSHESTEHSWDKVVSEKSMKDLTSEL
KEMNINVSNCLLKKNPPCEPILTDFPDVGVFIQPGKQNKKESGDSQGEENEEEGTHFPEL
TISLDQEVDLSTFVGPSPCTILQALTMSNANDFFSLERLETIGDSFLKYAITVYLYCTYP
GIHEGKLSYLRSKQVSNCNLYRLGKRKGFAECMISTKFEPYENWLPPGYVINDDKRKGPV
PKVLLIRNNLGQLEKVRDGSIIDSYCPENATLNWVPKITEGTEDPRCDPKKEGCNIQNGM
KEGCSLQNDKGHKEMSSNGMHHKEMSSISVDHEDRPSNQNREDFEEELEELETLPERVRQ
EEKDQVVIPYNLQTLHSIPDKSIADCVESLIGCYLTSCGKKAALKFMHWLGLKVLPQKKK
GSVEKTELLSLQCPDSPLLVHVPDYNSILFRLLEGYESLEQKIGYEFKDKSYLLQAFTHA
SYHYNTITDCYQRLEFLGDAILDYVITRHLYEDSCKYSPGVLTDLRSALVNNNIFAALAV
KWDFHKYFKAISPPLFGVIEKFVARQKEKEDEIDLSDDEGEAEDEEHVELEVPKALGDIF
ESLAGAIYLDSQMSLDTVWRVYYRIMKPQIDKYLKSIPKSPVRELLEMEPETAKFEKPER
TLEGKIRVTVNVVTKGTFTGVGRNYRIAKSAAAKKALRSIKALQAGGLT
NT seq
5730 nt
NT seq
+upstream
nt +downstream
nt
atggttagaacggagtctgcacccctgaaaaggttgcctaggcatctgagaaatgaggat
attcctacgcacacatttactccaaggacttatcaggtagagctcctggatgcagccttg
cagaggaacaccattatttgtctggggtctagtgcaggaaatacattcatatcagtgatg
ctactcaaagagttctcctctaaacttagaaagcagctaccaagcggcggaaagagaagt
gtagtatgcttaagctcagatgacagcattcaggcaatttcacaagttatcaaacatcac
agtgatctgaatgttacaccgatactagaattaccagaggattcttcgaaattaaactca
gttattaatgataatcaaatactggtaacaaagccttcagtgttcagtgatttgctgcta
aaaacttatctactcccaaaccagctcaatctagtcatattagaaaattgtcatttcatt
cttcaagaagatcacccttaccaaagcatcatgaaaattatccacagcggtgttccaaag
gaggatgcagtaaggattctgggattgacatcgtcattcattagtcagaaatgtcatgac
cctgaagatttggagcatgttatacggtcactggaagatcgcctgggagcccgcgcagag
acagccacactagtcatcgctgagaggtatggaattcgcccaaaggagtttctgactttt
tgtgataactatgaggatgtcacaggtacccttacattgctggatgatgtgctgagcagt
gctctggagtttcttaatgactgcaatatggaagatgaagaggatgatgatagagatcca
aaggaaattccaatttttgcgttttctgaatgtcttaatattctctacagtctgggtcca
tggtgtgcctcctgtattgcaagcatgtttatcactcagatagagaaagtggataaacat
gaaacaatacctgtgcataaaaagtttctaaaatactgcttaacacaattacggatagtt
accaccctgtttgagcaaaactttactcctaattatgatgttgaggaactattgcaatac
tcgacaccgagggtttacaaattagtggaccatttgcgtaaatacaaacccgagtatgac
tttatgatagtgagtactgggggagacatggatgactttctcgggaaggaggatcaagga
agtcagaatggggacagtgatggggatgaatccgaaatgtcggatgcctcggtcatcatg
tcggatgatgagtcatccaacagagaatataaagggaatgttgtccacatagctgtgaaa
aaggaaccagactgtgggaacctccaaaaagccgcagaccctttgaatgcagatggagaa
aaatacttgtgtggcattgtgtttgtggaacatcgatatgtggcccttgctattaataaa
ttcctagaggaggtttgctcttgggatgaaaatttgtgttttgtgaaaagccagcatcta
acaggacaaggattgaagaatggaaaatccaagaaagggaattggaagaagcaggaagaa
gttctgagaaaattcagactacaggacctgaatttgctgatttcaacgacagtcttggag
gatggtatagacgtcccaaaatgtaacctcattgtcaagtttgatcctcctcgaaattac
aagtcatacagccaatctaagggtcgtgctcgagctcgggattctgagtatgtgattcta
gtggaggagaacaagaggaatgcattcatgaaggattatgatgtgttcaaaggcatagag
ggggtattggtaggcaggacgaagtcagacgaggagtcagatgaagatgacaatctgttc
gaggacaaatcaacaagtttacccccatacattccaaatcaggataatccacaaatatgt
gtcaccatggatacagctattgcctttgtcaacagatactgtgccaaattacccagtgat
gccttcacccacctgaccccaaagtgcactttgcaggaaatccccagggagggaggatca
ctatacagagcaaccctcagtctcccaattaactccccttacaagcactttgttcaggga
gaagccatgccaaccaagaatcttgccaaaagggctgttgctctgaagctttgtgaaagt
ttacaccaggccggtgaactggatgatcagctgaatccagtgggaaaggaagtgttcaca
ctagaagaggaggaggaggaggaggaggaagaaacgacagaagtggaagaaggggaagat
tactgtggggatggaagacctggaaccaccaaaaggaagcagtactatttcaaaaggtta
tcgacctcattggtacaaagccaccccacaacagagccttgtctgctgtacaacatatcc
ctgaggttaagtaaacctatatccgatgaacagaacactcgaggtagaaagatctgtgcc
ccagaggacacacccaggggatttggaattctcacctctaaagatattccacaggtcccc
acattccctgtgtacaccagatcaggggaagtaactgccactattgacctgctcagcagc
gagttttcagtgtcctcggaggaactgaggagactgagggatttccacaggttcaccttc
accagtgtcctccgtctagagaaagaccccatggagttttgcccagaggaaagcgatctt
ggttatctccttgttccacttactaaagatgatgatggtaatgcagtcattgattggccc
ttcataatggaagttgaaaattccaaatcacatgtcagaagaaatatttatgattccaaa
agagaacaatttgtgttttccaaagaagagtatgaagatgcagttgtaatgccatcttat
cgaaatgtggatcaaccgcaacacttttatgtggcagaaatccgatctgaccttaatccg
tcctccccatttccctcgcccgagttatacaagaccttcagtgcatactatacaacaaag
tatggtttgaccatcacaaacttggatcagccattattagatgtggaccacacgtctgct
aggttgaatctgctgactcctcggtatatgaaccaaaagggagtagctctgccaacaagc
agcgcggaaaccaagaaagcaaggagggagaacctccagcagaagcagattcttgtgcct
gagctgtgtgaaattcacgtctttcctgcctcactttggagaaaagctgtctgcttgcca
acaattctctataggttgaactacttgcttgtggcagatgaaattcgagtgaaaattgca
gaaggttctggaataggtttggttaacttggaagaaggttttcgttttccccctttggat
ttcggatttgatccaaaggaggaggaagctgatgtcagctttgtgtgcaatagtactgtg
gataatgatgatagtatagatgaagctaatggtaaacttgtgaatgcttgtgatttaaca
agtcatagtcagaacaattgtgataatgttggaagttttagtgcagaagtggatgaattt
gatagaaagaaagcaaaagtctgtgataaaaagcaaaatctcaatgcagcatttcaaaat
gataaggcagctaatggtatctgtgatattcagaacaagatgtccaatgatcaaaatggt
ttttcggataatgatgaagaatgggagaatactttgcaggatcaaagtcatgaaagtact
gaacactcctgggataaagttgtatctgagaaatctatgaaggacctgacatcagaatta
aaggagatgaatattaatgtctcaaattgtctactaaaaaagaatcccccttgtgaaccc
attttgacagattttccagacgtgggggttttcattcagccaggaaaacaaaataagaag
gagtctggagattcccagggggaggaaaatgaggaagaggggacacactttccggagctg
accatatcacttgaccaagaggtggacttgagtacttttgtaggaccaagtccatgtacc
atattgcaagctttaaccatgtccaatgccaatgacttcttcagtttggaaaggctggaa
actatcggagactccttcctgaaatatgccatcactgtttatctgtattgtacctaccca
gggattcatgaaggcaagctcagctacctgagaagcaagcaagtcagtaattgtaacctt
tacaggttagggaaaaggaagggatttgcagaatgcatgatttccacaaaatttgagccc
tatgagaactggctacctccaggttatgtaatcaatgatgacaagaggaaaggtcctgtt
ccaaaagtcctgctgattcgaaacaatttaggccagttggagaaggtacgagatggcagt
atcatagattcctactgtccagaaaatgctaccttaaactgggtgccaaagatcacagaa
gggactgaagatcccaggtgtgaccccaagaaagaaggatgcaacattcagaatggtatg
aaagaaggatgcagccttcagaatgacaagggtcacaaggagatgtcctcaaatggcatg
catcacaaagagatgtcctccattagtgtggatcacgaggacaggccctcaaatcagaac
cgtgaggactttgaggaggagctggaggagttggagactttaccggagagggtccggcag
gaggagaaggaccaagtggtgattccctacaacctgcagaccctccacagtattcctgac
aagagcatcgccgactgtgtagagtccctcatcggctgctatctcacttcctgtggcaag
aaagcagctctgaagttcatgcactggttgggattaaaggttctgcctcaaaagaagaaa
gggtcagtggaaaagactgaattgctgagtttgcagtgcccagattctccattgttggtt
catgttccagactacaattccattctctttcgcttgcttgagggatatgaatctttagag
cagaagataggatatgaattcaaagacaaatcctaccttcttcaagccttcacccatgct
tcataccattacaataccatcacagattgctaccaaagactggaatttcttggagacgcc
atcttggattatgttattacccgtcatctctatgaagattcgtgcaagtattcaccaggc
gtgctcactgacctgaggtcagcgctggtcaacaacaacatctttgcagctctggctgtc
aagtgggacttccacaaatacttcaaggccatctccccgccattgtttggggtcatcgag
aaatttgtggctcgacagaaggagaaggaagatgaaattgacctcagcgatgatgagggg
gaggcagaggacgaggaacatgtagaattggaggttcctaaggctctaggggatattttt
gagtcattagcaggagccatatatttggatagccaaatgtctctagatactgtttggaga
gtctactaccgcataatgaagcctcaaatagacaaatacctaaagagtattccaaagtcc
ccagtgcgtgaactgttagaaatggaaccagagactgccaagtttgaaaaaccagagaga
accttggaaggcaaaatcagagttactgtcaacgtggtaaccaaggggacgtttactggg
gtggggaggaactacagaatagccaaaagtgccgccgccaaaaaagccctgcgctctatc
aaagcactgcaggccggaggactgacgtaa
DBGET
integrated database retrieval system
