Crassostrea virginica (eastern oyster): 111129570
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Entry
111129570 CDS
T09197
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB3-like
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03020
RNA polymerase
cvn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111129570
09124 Replication and repair
03420 Nucleotide excision repair
111129570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvn03021
]
111129570
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111129570
Transcription machinery [BR:
cvn03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111129570
DNA repair and recombination proteins [BR:
cvn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111129570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
Motif
Other DBs
NCBI-GeneID:
111129570
NCBI-ProteinID:
XP_022331732
UniProt:
A0A8B8DU25
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All DBs
Position
4:complement(25242565..25252005)
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AA seq
195 aa
AA seq
DB search
MRIYKYFQDCTCEEFCPECSVEFTLDVKCTEDQTKHVTSADLLSSNPKVVPVTSRDKDKK
SEYEETDDILIVKLRKGQELKVRAFARKGFAKEHAKWNPTCGVAFEYDPDNSLRHTLYPK
PEEWPKSEYSELEEDVYEAPFDGLGQPNKYFYNVESCGSLKPENIMFSALAVLKKKLSDL
QTQLSHEIQQDVLAI
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatttacaaatattttcaggattgtacatgtgaagagttttgtccagagtgttcc
gtggaatttaccctggatgtcaaatgtacggaggaccagacaaaacatgtgacaagtgct
gacctgctctcatcgaaccccaaagtagtgccggtgacatccagagataaagataaaaaa
agtgaatatgaagaaactgatgatattttgattgtgaaactaagaaaaggacaggaattg
aaagtacgcgcatttgctcgaaaaggttttgcaaaagagcatgccaagtggaatccaaca
tgtggagtagcatttgagtatgatccagacaattcattacgacacaccctgtatcccaaa
ccagaagaatggcccaagagtgaatattcagaattagaggaagatgtttatgaagcccca
tttgatggacttggtcaaccaaacaaatacttctacaatgtagagtcttgtggttcactg
aaaccagaaaacatcatgttctcagcattagcagtgctcaaaaagaaactcagtgacttg
cagactcaactcagccatgagatccagcaggatgtgctcgccatttga
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