Crassostrea virginica (eastern oyster): 111130065
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Entry
111130065 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: protein SMG5-like
KO
K11125
protein SMG5
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111130065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111130065
03032 DNA replication proteins [BR:
cvn03032
]
111130065
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
111130065
mRNA cycle factors
Common to processing body (P body) and stress granule
111130065
DNA replication proteins [BR:
cvn03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
111130065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
CMS1
Motif
Other DBs
NCBI-GeneID:
111130065
NCBI-ProteinID:
XP_022332454
UniProt:
A0A8B8DY83
LinkDB
All DBs
Position
4:complement(2010457..2043129)
Genome browser
AA seq
1094 aa
AA seq
DB search
MKKATEKPGESKPDVDKAKRVYRVALDAIKKLDEILKQKKAYRDVFLQDAVGLRNKLKEY
CERLMFYNPVDYGRKAEEVLWRKVFYDPIQLVKKNRRHLRSGSSLEAAFRTHLSAATGYY
YHLIFRLQSEFSLKLHRTVDFFLIPESKSGHKKSLGQAVRRKDATPAVQDWATKACHRCL
VCLGDIARYQQEFDKGVSKAAAERFYHQAIALYPDNGMPHNQLGTLKGSRYFQCEAAYHY
IRCMVCEKAFDGAEGNLDRLFEKNRKRFRELQQSSNQNLPPELQRQYDVKFFLIHFIHLL
DVFFDTNRSIDAGELQECCQSALQSFNLCMFYEPVVYAEEENRDENLQYLDDDLVFKLVV
ICMSTIHLLQIRGRTGHSQTVTAAIAFLLALFSHILNHVVIRLHNALYEKENPNKLLHHQ
QEEATGDEDLSDLETGDDGLPNGPKKDPYQYHSTDRRTDEEAQSVGDKEEKDREGSNKKS
GKVKSVKRRRQRRRGRESDSSDLSDVSDLSEGGGDLSDQFLSDESEEEFVGFFTNDSDSE
ISDDLMESQELEPGFASRSPSTNSTKPTPDSSLTNVNSHSLELVNSQTNIWSSEXDSLAH
LSSELLSSSMTLLGQNFRLEAQNSRITEKDEAELAKCEEVVQGKREVPVPPGFASSSEAK
HVAEITSKLANFVIETDTEVSAGPTDTEMSGCDDSTTEAEDQASLSDSTDKGELEHRQIQ
NLVDVLQSEGLLPVVKVVCDWMKCNREVILTCAQSSQSLWHRLSVLLNILPKEAVIAAHD
QCWVDQLKSTLNSTGQPDWRQTLPLTEDINLWQFSPLSEXHAGIEFTSKRRGQLSDIQEC
FLRAGSLRHFGYYLSSLENLTFSYNEEQGSFIAPSHTGNVEENEKAAMDREADEESRRNQ
LMRDMAQLRLQAEVSQLEGSLEATDTPHFPPYLIPDTSCLCDNIQLVKQLTQSGKGILII
PISVIDTLDFLKKESVGAREAIRWLEVEFRKGNRYIRAQKSNEKVADHMPKNLKKSNRDL
WSQYEILSCARYLAQXGENISSGHMVAVLSSREFGQSAPPTFQKLLSNCHQDGISVEKIS
VFSNKWLDTLKSKG
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaggcgacagaaaaacctggcgaatcgaagccggatgtcgacaaagcgaaacgt
gtttacagggttgcactagatgcaattaagaaacttgatgagattttgaagcagaaaaag
gcttatagagatgtatttctgcaggatgcagtgggactcagaaacaaattgaaggaatat
tgtgagcggttgatgttctacaatccagtggactatggaagaaaggctgaggaagtgtta
tggagaaaagtcttttatgatcctattcagctggtcaagaaaaatagaaggcacctgagg
tcgggaagctctttggaggctgctttccgcacacacctgtccgctgccacagggtattac
taccaccttatcttccgactgcagtccgagttcagcctcaaacttcatagaaccgtggac
ttcttcctcataccagaatccaaatctggacacaagaagtctttgggtcaggccgtgagg
aggaaagacgccacccccgcggtacaggactgggcgaccaaggcctgtcatcgctgcctc
gtctgtctgggagatattgcccgctatcagcaggaatttgacaaaggtgtcagcaaggct
gcagctgagaggttctatcaccaggccattgcactgtacccagataacggaatgccacac
aatcagctgggcacgctgaaaggttcccgctacttccagtgtgaagccgcttatcactac
ataagatgtatggtttgtgagaaggcctttgatggagccgagggaaatctagaccgactg
tttgagaagaaccgcaagcgtttccgagaactacagcaaagttccaatcagaatctgcca
ccagagcttcagaggcagtatgacgtgaagttttttcttatccattttatccatttactg
gatgtattctttgatacaaatagaagcattgatgctggcgagctccaggagtgttgtcag
tctgcgctgcagagcttcaacctgtgcatgttttacgagccggtggtttacgcggaggag
gagaacagggatgagaacctgcagtacttggacgatgacctggtgtttaagcttgttgtg
atttgtatgtcaacaatccacctgctgcagatcagaggtaggacggggcattctcaaaca
gtgactgcggccatagctttcctcttggccctgttctcccacatcctgaaccatgttgta
atccgcctccataacgccctgtacgagaaggagaatcccaacaaactactgcatcaccag
caggaggaagccacaggtgatgaagacttgtcggacctagagactggagatgatggacta
cctaatggcccaaagaaggatccctaccagtaccacagcacagacagacggacagacgag
gaagcccagagtgtgggggataaagaggaaaaggatagagagggaagcaacaagaagagt
ggcaaagtcaaaagtgtcaagagacgtcgacagcgacgcagaggaagagagagtgacagc
tccgatttgtcggatgtgtcggacctcagtgaaggaggtggtgatttgtccgaccagttc
ttgtcagacgagtcagaggaggaatttgtggggtttttcaccaacgactcagactcggaa
atatcggacgatctcatggagagccaggaactggagcctggatttgcttccaggtctccc
tccaccaacagcaccaagcccactccggactccagtctaaccaacgtcaactcccacagc
ctggagctggtgaactcgcagaccaatatctggtcgtccgagntcgattccctggctcac
ctctcctccgagctgctctcctcctccatgactcttctggggcagaatttccgtctggag
gcacagaacagtcggatcacggagaaagacgaggccgaactggccaagtgtgaggaggtg
gtccaagggaagagggaggttcccgtccctccaggctttgcttcatcatcagaggccaaa
catgttgctgaaatcaccagtaaattggccaactttgtgatagagactgacaccgaagtg
agcgctggtcccacagatacagaaatgtcaggttgtgatgattctacgacagaagctgag
gatcaggccagtctctctgactccactgacaagggcgagttggagcacagacagatacag
aacctggtggatgtgttacagagcgagggtctgttaccggtcgtcaaggtggtctgtgat
tggatgaagtgtaacagagaagtcatcctcacctgtgcacagagctcacagtccctttgg
cacaggctctcagtcctgttgaacatccttcccaaagaagctgtgatagctgcacacgac
cagtgttgggttgaccaactaaaatccacattgaactcgactggtcagccagactggaga
cagaccttacctctcactgaggacattaacctgtggcagttctctcccctgtctgagngc
catgcagggatcgagttcacttcgaaacggagaggccagctcagtgacattcaagagtgc
ttcttaagggcaggcagtctgagacactttggatactacctgtcatctttagagaatttg
accttcagctacaatgaagaacagggctcattcattgctccatcccatacaggaaatgtg
gaagaaaatgaaaaagcagccatggatcgggaggctgatgaggagagcaggagaaaccag
ctgatgagggacatggcccagctccgcttacaggcagaggtcagtcagctggagggctct
ctggaggccacagacaccccccacttcccaccctacctgattcctgacaccagctgtctg
tgtgataacattcaactagtcaagcagctcacccagagtggtaaaggcatcctcatcatc
cccatatctgtgatcgacacgcttgatttcctgaagaaggagtcggtcggggcaagggaa
gccatccgctggctagaggtggagttccgaaaaggaaaccggtacatacgcgcgcagaag
agcaacgagaaagtggctgatcatatgccgaaaaacctgaagaaaagtaatcgtgatttg
tggagtcagtacgagatcctctcctgtgctcgatacctggcccaancaggagaaaacatc
agttctggtcacatggtggccgtcctgtccagtagggaattcggccagtctgccccaccc
acctttcagaagttgctctctaattgtcatcaagatggaatcagtgtggagaagatctcc
gtgttcagcaacaagtggttggataccctgaagagtaaaggctga
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integrated database retrieval system
