Crassostrea virginica (eastern oyster): 111130565
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Entry
111130565 CDS
T09197
Name
(RefSeq) 5'-3' exoribonuclease 2-like isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03008
Ribosome biogenesis in eukaryotes
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111130565
09123 Folding, sorting and degradation
03018 RNA degradation
111130565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvn03021
]
111130565
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111130565
03009 Ribosome biogenesis [BR:
cvn03009
]
111130565
03016 Transfer RNA biogenesis [BR:
cvn03016
]
111130565
Transcription machinery [BR:
cvn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111130565
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
111130565
Ribosome biogenesis [BR:
cvn03009
]
Eukaryotic type
Pre-60S particles
RNases
111130565
Transfer RNA biogenesis [BR:
cvn03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
111130565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
111130565
NCBI-ProteinID:
XP_022333431
UniProt:
A0A8B8E2D9
LinkDB
All DBs
Position
4:39480015..39503564
Genome browser
AA seq
987 aa
AA seq
DB search
MGVPAFFRWLSRKNPSILVHCIEEKPRDINGVKVPVDTSQPNPNDYEFDNLYLDMNGIIH
PCCHPEDKPAPKNEDEMMVLIFEYIDRIFSIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
ASKETKEKIEEMARLREELTSKGFNLPPEKEKGEHFDSNCITPGTPFMFRLADCLRYYIH
DRLNNDPGWQNIKIILSDANVPGEGEHKIMDYIRRQRGQPDHDPNTKHCLCGADADLIML
GLATHEPHFTIIREEFKPNQPRPCDMCGQLGHEMKECLGLPKEMCGENDELAKPMGAEQE
FIFIRLNILREYLERELLMDNLPFNYDFERAIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVKLYKSCVRRTGGYLTNSGVVNLERVQVVMTDLGEVEDEIFKRRRETELSFRRRDKQ
RKEREKRFAEGPRWTPGGQFAPQPLGHSHSSPSPVNNPRQEAARGRMDTMRNSANKNAAA
ELKAMMTKDDQRGEKRKAEDQSKPADEEEEEEPADEVRLWEDGWKDRYYSSKFGVEGADA
EFRQTVANHYVRGLCWVLRYYYQGCASWKWYFPYHYAPFASDFVNIGQLSNSFEKNTVPF
RPLEQLMGVFPAASKKHLPVTWQRLMCDPESPIIDFYPTDFKIDLNGKKYAWQGVALLPF
VDEKRLLSALETVYPDLTEDERERNTWGSDRLFVGIRHPSYSFLEGLYEGEPSTEKVGLN
PKTAEGMAGLVWADKRVTLTGGTVESPLSELQPITDNRALSVHYKDPEYDEDHLFESVVL
KGAEFHGGQITPPLAPLVSFFPVCQYLWLMPDRVLKPEDFNQRNQGQGWRPQIGMSRNSM
YRGKDTGPANRMIRHGVGNQYGARIPPPSHMGHQGGGYQQRGRGGGGGYGYSGNSGNYGN
NSSNHGNNSGYGNRDQQGWGGGGGRGGGYQQGGGRGGYQQYNQYNQGYQQQSNRGSRGGH
QGNNYNNRGNPGYNRGGYNRGGYQQRY
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagcatttttccgctggcttagtcgcaagaatccctccattcttgtccac
tgcatcgaagaaaagccccgagatataaatggtgttaaggtgcctgtagacacaagccaa
cccaatcctaatgactatgaatttgataacctctacctggacatgaatgggattatccac
ccttgttgtcacccagaggacaaacctgccccaaagaatgaggatgagatgatggtcctt
atttttgagtacattgacagaattttctctattgtgaggcccaggaaattactctacatg
gcaattgatggtgttgcacccagagccaaaatgaaccaacagagatcaagaagatttaga
gcttctaaggaaacaaaagagaaaatagaggagatggctcgcctaagggaagaactgaca
agcaaagggtttaatctacccccagaaaaagaaaagggagagcactttgacagcaactgt
attactcctggtactccattcatgtttagactagcagattgcttgcggtactacatacac
gatagactcaacaacgacccagggtggcagaatatcaaaatcatcctctctgatgccaat
gtccctggggagggggagcataaaatcatggactacatcaggagacagagaggccaacct
gatcacgacccaaacacaaaacactgtctctgtggagcggatgcggatttgattatgtta
ggacttgcaacacatgaaccccatttcaccatcattagggaggaattcaaaccaaatcag
cccagaccatgtgacatgtgtggtcagctaggtcatgagatgaaagagtgcctaggcctg
cccaaggagatgtgtggtgagaatgatgaattggccaaacctatgggagcagagcaggaa
tttatatttatcaggttaaatattttgcgagaatatttagaacgagagcttttaatggac
aacctaccgttcaattatgactttgagagagccatagacgactgggtgttcatgtgtttc
tttgtgggaaatgacttcctgccccatttaccttcactggagatcagggaaggagcaata
gacagacttgtaaaactttataagagttgtgtcagaagaacaggggggtacctcacaaac
agtggtgttgtgaaccttgagcgagtccaggttgtcatgacagatcttggggaagtagaa
gatgaaattttcaaacgcagaagagaaactgagctcagctttcgaaggagagacaaacaa
aggaaagaaagagaaaaaagatttgcagaaggacctcgatggacccctgggggacagttt
gctcctcagcctcttggtcactcccacagttccccctccccagtcaacaacccgagacaa
gaggcagccagaggtcggatggacaccatgaggaactcggccaacaagaatgctgctgct
gagctgaaagccatgatgacaaaagatgatcagcgaggtgagaagaggaaagcagaggac
caatcaaagcctgctgatgaggaggaggaagaggaaccagctgatgaagtcaggttgtgg
gaggatggatggaaggaccggtattacagctccaagtttggagtggagggagcggacgca
gaattcagacagactgtggctaaccactatgttcgaggtctctgctgggttctcaggtac
tactaccagggctgtgcctcatggaagtggtactttccctaccactacgctccttttgcc
tcagattttgtcaacataggacagctgtcaaactcttttgagaagaacacagtaccattt
cggccattagagcagttgatgggagtgttccctgcagccagtaagaaacatctgccagtc
acatggcagagactcatgtgtgatccagaatctccaatcattgatttttatccgacagat
tttaaaattgatctcaatggtaaaaaatatgcatggcaaggtgtggcattacttcccttt
gttgatgagaagaggttattatctgcccttgagacagtctacccagaccttacagaagat
gagcgtgagaggaacacctggggcagtgaccgcttgtttgtggggatccgacacccctcc
tactccttcctggagggactgtatgagggagaacccagcacagagaaggtaggactgaat
ccaaagactgctgagggtatggctggacttgtgtgggcagacaagagggtgacattaaca
ggaggaacagtagagtctccgctttcagaacttcagccaatcacagacaacagggctctc
agtgttcattacaaagatccagaatatgatgaagatcacttatttgagtctgtagttctc
aaaggagctgagtttcatggggggcagataactccgcccctagctcctttagtgtctttt
ttcccagtctgtcagtatctctggttgatgccagacagagtcctgaagcccgaggacttc
aatcagcgaaatcaaggacagggctggaggcctcagatcggaatgtctcggaacagcatg
taccgtggcaaagacacaggtccagcaaatcgcatgatcagacatggtgttgggaatcag
tatggagccaggattccaccaccctcccacatggggcaccagggaggagggtaccagcaa
agaggcagaggaggaggtggaggatatggttactctggtaactctggtaactatggtaac
aactctagtaaccatggaaacaactctggctatggtaacagagaccagcaaggatgggga
ggtggtggaggaagagggggagggtaccagcaaggaggaggaagaggagggtaccagcaa
tacaatcagtataaccaaggctaccaacagcagtcgaatagagggtctagaggtggtcac
caaggcaacaactacaacaacagaggaaatcctggatataatagagggggctacaatagg
gggggttaccaacagcggtactga
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