KEGG   Crassostrea virginica (eastern oyster): 111130698
Entry
111130698         CDS       T09197                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
cvn  Crassostrea virginica (eastern oyster)
Pathway
cvn03020  RNA polymerase
cvn03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cvn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    111130698
  09124 Replication and repair
   03420 Nucleotide excision repair
    111130698
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cvn03021]
    111130698
   03019 Messenger RNA biogenesis [BR:cvn03019]
    111130698
   03400 DNA repair and recombination proteins [BR:cvn03400]
    111130698
Transcription machinery [BR:cvn03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     111130698
Messenger RNA biogenesis [BR:cvn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     111130698
DNA repair and recombination proteins [BR:cvn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      111130698
SSDB
Motif
Pfam: S1 SHS2_Rpb7-N RNA_pol_Rbc25
Other DBs
NCBI-GeneID: 111130698
NCBI-ProteinID: XP_022333602
UniProt: A0A8B8E032
LinkDB
Position
4:21809029..21817021
AA seq 170 aa
MFYHVSLEHEILLHPRYFGPNLLNIVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGTIQ
PGRGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKVGLFTEIGPLSCFVSRHSIPANMEFD
PNSNPPCYKNKEEDEVIQQDDEIRLKIVGTRVDAKDIFAIGTLMDDYLGL
NT seq 513 nt   +upstreamnt  +downstreamnt
atgttctaccatgtttcattagaacatgaaatacttctccatccaagatatttcggacca
aatttgcttaatatagttaaacaaaaactatttacagaagttgagggaacatgcactggc
aaatatggttttgtgatagcagtcaccactattgacaatataggggcaggcaccatacaa
cctggtcgagggtttgtggtatatccagtgaaatacaaagccatagtgttcagacctttt
aagggagaggtgcttgatgcagtagttacacaagtcaacaaggttggattatttacagaa
atcggacctttatcttgctttgtttcaagacattcaataccagccaacatggaatttgat
ccaaattcaaatccaccatgttacaagaacaaagaagaggatgaagtcattcaacaagat
gatgaaattagacttaaaatagtgggaacaagagttgatgcaaaagatatttttgccatt
ggaaccttaatggatgattatttagggttatag

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