Crassostrea virginica (eastern oyster): 111130755
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Entry
111130755 CDS
T09197
Name
(RefSeq) 5'-3' exoribonuclease 2-like isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03008
Ribosome biogenesis in eukaryotes
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111130755
09123 Folding, sorting and degradation
03018 RNA degradation
111130755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvn03021
]
111130755
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111130755
03009 Ribosome biogenesis [BR:
cvn03009
]
111130755
03016 Transfer RNA biogenesis [BR:
cvn03016
]
111130755
Transcription machinery [BR:
cvn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111130755
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
111130755
Ribosome biogenesis [BR:
cvn03009
]
Eukaryotic type
Pre-60S particles
RNases
111130755
Transfer RNA biogenesis [BR:
cvn03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
111130755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
111130755
NCBI-ProteinID:
XP_022333688
UniProt:
A0A8B8E1L2
LinkDB
All DBs
Position
4:complement(42244382..42271702)
Genome browser
AA seq
962 aa
AA seq
DB search
MGVPAFFRWLSRKNPSILVHCIEEKPRDINGVKVPVDTSQPNPNDYEFDNLYLDMNGIIH
PCCHPEDKPAPKNEDEMMVLIFEYIDRIFSIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
ASKETKEKIEEMARLREELTSKGFNLPPEKEKGEHFDSNCITPGTPFMFRLADCLRYYIH
DRLNNDPGWQNIKIILSDANVPGEGEHKIMDYIRRQRGQPDHDPNTKHCLCGADADLIML
GLATHEPHFTIIREEFKPNQPRPCDMCGQLGHEMKECLGLPKEMCGENDELAKPMGAEQE
FIFIRLNILREYLERELLMDNLPFNYDFERAIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVKLYKSCVRRTGGYLTNSGVVNLERVQVVMTDLGEVEDEIFKRRRETELSFRRRDKQ
RKEREKRFAEGPRWTPGGQFAPQPLGHSHSSPSPVNNPRQEAARGRMDSMRNSANKNAAA
ELKAMMTKDDQRGEKRKAEDQSKPADEQEEEEPADEVRLWEDGWKDRYYSSKFGVEGADA
EFRQTVANHYVRGLCWVLRYYYQGCASWKWYFPYHYAPFASDFVNIGQLSNSFEKNTVPF
RPLEQLMGVFPAASKKHLPITWQRLMCDPESPIIDFYPTDFKIDLNGKKYAWQGVALLPF
VDEKRLLSALETVYPDLTEDERERNTWGSDRLFVGIRHPSYSFLEGLYEGEPSTEKVGLN
PKTAEGMAGLVWADKRVTLTGGTVESPLSELQPITDNRALSVHYKDPEYDEDHLFESVVL
KGAEMPDRVLKPEDFNQRNQGQGWRPQIGMSRNSMYRGKDTGPANRMIRHGVGNQYGARI
PPPSHMGHQGGGYQQRGRGGGGGYGYSGNSGNYGNNSGNHGNNSGYGNRDQQGWGGGGGR
GGGYQQGGGNGGYQQYNQYNQGYQQQSNRGSRGGHQGNNYNNRGNPGYNRGGYNRGGYQQ
RY
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagcatttttccgctggcttagtcgcaagaatccctccattcttgtccac
tgcatcgaagaaaagccccgagatataaatggtgttaaggtgcctgtagacacaagccaa
cccaatcctaatgactatgaatttgataacctctacctggacatgaatgggattattcac
ccttgttgtcacccagaggacaaacctgccccaaagaatgaggatgagatgatggtcctc
atttttgagtacattgacagaattttctctattgtgaggcccaggaaattactctacatg
gcaattgatggtgttgcacccagagccaaaatgaaccaacagagatcaagaagatttaga
gcttctaaggaaacaaaagagaaaatagaggagatggctcgcctaagggaagaactgaca
agcaaagggtttaatctacccccagaaaaagaaaagggagagcactttgacagcaactgt
attactcctggtactccattcatgtttagactagcagattgcttacggtactacatacac
gatagactcaacaacgacccagggtggcagaatatcaagatcatcctctctgatgccaat
gtccctggggagggcgagcataaaatcatggactacatcaggagacagagaggccaacct
gatcatgacccaaacacaaaacactgtctctgtggagctgatgcggatttgattatgtta
ggacttgcaacacatgaaccccatttcaccatcattagggaggaattcaaaccaaatcag
cccagaccatgtgacatgtgtggtcagctaggtcatgagatgaaagagtgcctaggcctg
cccaaggagatgtgtggcgagaatgacgaattggccaaacctatgggagcagagcaggaa
tttatatttatcaggttaaatattttgcgagaatatttagaacgagagcttttaatggac
aacctaccgttcaattatgactttgagagagccatagacgactgggtgttcatgtgtttc
tttgtgggaaacgatttcctgccccatttaccttcactggagatcagggaaggagcaata
gacagactagtaaaactttataaaagttgtgtcagaagaacaggggggtacctcacaaac
agtggtgttgtgaaccttgagcgagtccaggttgtcatgacagatcttggggaagtagaa
gacgaaattttcaaacgcagaagagaaactgagctcagctttagaagaagagacaaacaa
aggaaagaaagagaaaaaagatttgcagagggacctcgatggacccctgggggacagttt
gctcctcagcctcttggtcactcccacagttccccctccccagtcaacaacccgagacaa
gaggcagccagaggtcggatggacagcatgaggaactcggccaacaagaatgctgctgct
gaactgaaagccatgatgacaaaagatgatcagcgaggtgagaagaggaaagcagaggac
caatcaaagcctgctgatgagcaggaggaagaggaaccagctgatgaagtcaggttgtgg
gaggatggatggaaggaccggtattacagctccaagtttggagtggagggagccgacgca
gaattcagacagactgtggctaaccactatgttcgaggtctctgctgggttctcaggtac
tactaccagggctgtgcctcatggaagtggtactttccctaccactacgctccttttgcc
tcagattttgtcaacataggacagctgtcaaactcttttgagaagaacacagtaccattt
cggccattagagcagttgatgggagtgttccctgcagccagtaagaaacatctgccaatc
acatggcagagactcatgtgtgatccagaatctccaatcattgatttttatccgactgat
tttaaaattgatctcaatggtaaaaaatatgcatggcaaggtgtggcattactccccttt
gttgatgagaagaggttattatctgcccttgagacagtctacccagaccttacagaagat
gagcgtgagaggaacacctggggcagtgaccgcttgtttgtggggatccgacacccctcc
tactccttcctggagggactgtatgagggagaacccagcacagagaaggtaggactgaat
ccaaagactgctgagggtatggctggccttgtgtgggcagacaagagggtgacattaaca
ggaggaacagtagagtctccgctttcagaacttcagccaatcacagacaacagggctctc
agtgttcattacaaagatccagaatatgatgaagatcacttatttgagtctgtagttctc
aaaggagctgagatgccagacagagtgctgaagcccgaggacttcaatcagcgaaatcaa
ggacagggctggaggcctcagatcggaatgtctaggaacagcatgtaccgtggcaaagac
acaggtccagccaatcgcatgatcagacatggtgttgggaatcagtatggagccaggatt
ccaccaccctcccacatggggcaccagggaggagggtaccagcaaagaggcagaggagga
ggtggaggatatggttactctggtaactctggtaactatggtaacaactctggtaaccat
ggaaacaactctggctatggaaacagagaccagcaaggatggggaggtggtggaggaaga
gggggagggtaccagcaaggaggaggaaacggagggtaccagcaatacaatcagtataac
caaggctaccaacagcagtcgaatagagggtctagaggtggtcaccaaggcaacaactac
aacaacagaggaaatcctggatataatagagggggctacaatagggggggttaccaacag
cggtactga
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