Crassostrea virginica (eastern oyster): 111130925
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Entry
111130925 CDS
T09197
Name
(RefSeq) probable methyltransferase TARBP1 isoform X1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cvn03016
]
111130925
03036 Chromosome and associated proteins [BR:
cvn03036
]
111130925
Enzymes [BR:
cvn01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
111130925
Transfer RNA biogenesis [BR:
cvn03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
111130925
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
111130925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
Motif
Other DBs
NCBI-GeneID:
111130925
NCBI-ProteinID:
XP_022333918
EnsemblRapid:
LOC111130925
UniProt:
A0A8B8E297
LinkDB
All DBs
Position
4:complement(18507531..18520806)
Genome browser
AA seq
1517 aa
AA seq
DB search
MDFITVKKIASEAINPAKLIEQVVSQIKEHWNNKKFTDSVFCDVLFLLESIISSDQDVKT
DYVHKVLDEVCLPLLGKIHPSFDSRVENLAALTSVSSLCGTCLLKAEESRAVELVDQCLG
LLGSYSEDADWSSEEGGTMDIYGCVSVLQQTSKPSRNKVSPSIQSKLLRGYLSITRAVKC
MKNNLLINMTLNCLLNIMNLSADGKLDRLTSVWELICEEFEAGSEKPYILLCGMSNHFFP
VNNSNVVLDLKCKDAFWRMIEHGISKRTPSSRKQTMYLLKRITDICDTCGVSVRSENLFQ
WGSGSKVTTEIWEDYILLLETLEEKQVHIIKPVLPRLSKVIRATKTDQNGQGVLHTSWLT
AVFRRMLMHESIYVVRWAANTILTLNLNLCPMLEQGQGKYFSGEFLLSIQEQRLFVRQEG
APAGTCPPCGEALTGFFRNCWEVLDNPLAKASFFKDIITTILSNTWSPVPLQFIFEALSK
IPSTPILDAAALLDLKNGVSSSMRTWDGFTRGTVLCFCGKILINLINTETTLPLDFFSTL
TIFSQQESLCRGTSLWKDVSDWLRIVTNGEQKHWTTTDIKTCIRDQITKHLAVKGGCEGG
LDETDILLTVRMILLSLDADILTLKPRSEHDTYHLTHSLQSLSSTINDFPSHPYMSVIKV
ERALQLMGGLMTELGETTDEVHQFIHNSLVLSFTSTVIFIQQRLTEGWKEISDLPSLNLC
CDALSLVVGRSHDAQTSEAVVTLSKKCLQSLQTLEQLQDSAENQIRRLGASAVLGAITSC
AANQKLVHRLLSLLQPSTSFIPSTFVKPSSENGISQKEWGVLASDFMTSQWKIVHFYLRN
TQSVSCDTFVSMETCIDYLPVSSGEATVILFSCIKILLPLLIIEGRQDTVVQVLGITWTY
LLERQGKGTSFWIYLEGYTDMAFQRALMTRPQDSPVTQKLMELSGELLEIGEEKSGVVNV
LLKHLLSQCPLPMENFLSLVVQCCMFGPIYKKQDRLLMDVYSYVSSLGPRLAVNQLHPWQ
PKTLMVRVRLVEFLCQLSPQNPLHHSFANLLLSALLEKYQEVVQLSSGNIFINSLAHRQK
NRLMQFAVVLEPFISQGDSEGVLLRLLEFLSLEMQPSVRLFQEWICTRLLARFPDLIPRL
WPAFVTIREKSSSGLCSLLHVVAHVGPLQTAESQELFYDTSLPKVLTLSMAHHFHIRIHA
QAVLSLLWDQCKALGLRGVLSRHGIVSACFVLFDEDNNSTKNMRKILESYFLAVLDPHRD
YSVETVFHTLPRLGLLNDDEWIPPHYFTMYPKDSFMPLMNPDPSLAKCEESAWHFRAQNE
TESEETGGDIQKKIMPWRLMNPDDEVMEELEYAKRRQRSDGLILVTSLIDKVPNLGGLCR
TSEIFGVSEFVINKLRYVEDKMFQSLSVTAHKWVPIREVYETCLPEFLQQKKSQGYTLVG
VEQTANSVPLNDFKFPVKTLLLLGNEKEGIPADLIGLLDVCVEIPQQGVIRSLNVHVSGA
ILVWEYRRQQMMAGKAE
NT seq
4554 nt
NT seq
+upstream
nt +downstream
nt
atggatttcataacagtaaagaagatagcatctgaagctatcaatccagccaaacttata
gaacaggtagtgagtcagatcaaggaacactggaataacaagaagttcacagactcagtt
ttctgtgatgttctgttcctattagagagcattatctcatctgatcaagacgtgaagact
gattatgtccacaaagtgttggatgaggtgtgcctccccctacttggtaagatccacccg
tcgtttgacagtcgagtggagaacttggcggcactgaccagtgtcagttccctatgtggc
acttgtttgctgaaagcggaggagtcgagagcagtggaactggttgaccagtgccttggg
ctgttggggagttacagcgaggatgctgattggtcatccgaggaaggagggacgatggat
atctatggctgtgtatcagtcctccagcaaacatctaaacccagcaggaacaaggtctca
ccaagcattcaatccaagcttcttcgagggtacctcagtattacacgtgctgtgaaatgt
atgaaaaataacttgttgataaacatgacactgaattgtctcctgaatattatgaattta
agtgctgatggaaagttggatagacttacaagtgtttgggaactgatttgtgaagaattt
gaagctggaagtgaaaagccttacattttattgtgtggtatgtccaaccatttctttcct
gtgaacaacagcaatgtggtgcttgatttgaagtgtaaggatgcattctggaggatgatt
gagcatggaatcagtaaaaggactccatcatccagaaaacagaccatgtacctcctgaag
cgcatcacagacatttgtgacacatgtggtgtgagtgttcggagtgaaaacctgttccag
tgggggtcagggtcaaaggtcactacagagatctgggaggactacatactgttgctggag
actctggaggagaaacaggtccacatcattaagccagtacttccaagattatctaaagtg
atcagagccacaaagaccgatcagaatgggcaaggggtattgcacacatcatggctaaca
gcagtttttcgaagaatgttgatgcatgaaagcatctatgttgtaagatgggctgccaac
acaatacttactctaaatctcaatctttgtccaatgttggaacaaggtcaaggaaagtac
ttcagtggagagttcttgctctcaatacaagaacagagattgttcgtccgacaggagggg
gcacctgcaggcacctgtcctccttgtggggaggctctcacgggcttcttcagaaattgc
tgggaggtccttgacaacccattagccaaggcctccttctttaaggacatcatcacaacc
attttgagcaacacttggagtcctgtaccattacagtttatatttgaggctctgtccaaa
atcccaagcactccaatactggatgctgctgcacttcttgatttaaaaaatggtgtgagc
agcagtatgagaacttgggatggcttcacaagaggaactgtgctgtgcttctgcgggaaa
attctcatcaatctcatcaacactgagacaactttacccttggattttttctccacactc
accattttttcacaacaagaaagtctatgtagagggaccagtttatggaaggatgtttct
gattggctgaggatagtcacaaatggggagcagaagcactggacaaccacggacatcaag
acatgcattagagatcagataaccaaacacctagctgttaaaggtggttgtgagggtggg
ctggatgaaacagacattctactgactgtcaggatgatacttttgtcgttggacgccgat
atcctcaccctgaagcctcggtctgagcacgacacctaccatctgacacacagtctgcag
tctctgtccagcacgatcaatgacttcccctcccacccctacatgtccgtaatcaaggtg
gagagggccctgcagctgatggggggacttatgacagagcttggggagacaactgatgaa
gtccaccagtttatccacaattctctggttctctcctttacatcaacagttatatttata
caacaaagactgacagagggctggaaagagataagtgatctcccctctctgaatctatgc
tgtgatgccttgtcactggttgttggtaggtcacatgatgctcagacctcagaggctgta
gtcaccttgtccaaaaaatgcttacagagtctacagacattagaacagctacaggacagt
gctgagaaccagattagacgcttgggtgctagtgctgtattgggtgccatcacaagttgt
gcggcaaaccagaaactggttcatcgtttactgtctctcctccagccgtcaacctcgttc
attccttccacctttgtaaagccttcctccgaaaatggcatcagtcagaaagagtgggga
gtgcttgcatccgattttatgacaagtcaatggaaaatcgtgcatttctacctgaggaac
acccagtctgtgtcatgtgacacatttgtctccatggagacctgtatagactatctgcct
gtcagttcaggggaggccactgtcattctcttcagttgcatcaagatacttctaccactg
ttaatcattgaggggaggcaggacactgttgtacaggtgcttgggataacctggacctat
ctgttggagcggcaggggaaggggaccagtttctggatatatctggagggctacactgat
atggccttccagcgggcactgatgactcggccacaagactcaccagtcactcaaaaactc
atggagctgtccggggagctgctggagatcggggaggagaagagtggggtggtcaatgtc
ctcctgaaacacctgctctcccagtgccccctccccatggagaacttcctgtctctggtt
gtacagtgctgcatgtttggcccaatttacaaaaagcaggataggctgttgatggacgtg
tacagttacgtgtcatcactgggacccaggctggctgtcaatcagcttcacccatggcaa
cccaaaactctgatggtgagagtgaggctggtggaattcctctgccagttgtccccccag
aacccccttcatcactcatttgccaacctccttctgtctgccttattggagaagtaccaa
gaagtggtacagctgtcctctggcaacatcttcatcaactccttggcacaccgccagaag
aaccgactcatgcagtttgctgtggtgttggagccgtttatttctcagggggacagtgag
ggggtgctcctgcgcctgctggagttcctcagtctggagatgcagccttctgtgagactg
ttccaggaatggatctgtacccgactccttgctcgattcccggatctaatccccaggctc
tggccagcctttgtgacgattcgagagaagagctcctctggtctgtgctcactccttcat
gttgtggctcatgttggacccctccagacagcagaatcccaggaattgttctatgacacc
tccctgcccaaggttttgaccctgtccatggcccaccatttccacatccggatccacgcc
caggctgtcctgtccttgttgtgggaccagtgtaaagctctcggactccggggcgttctc
agtcgtcatggtatcgtcagcgcctgtttcgtgctctttgatgaagacaacaactctact
aagaatatgaggaagatactggagagttattttctggctgtccttgacccccatagagac
tacagtgtcgagaccgtgttccacactttaccccgcctgggactgttaaatgatgacgag
tggattcctccccattacttcaccatgtatcctaaggactcttttatgcccctcatgaac
cctgaccccagtctggccaagtgtgaggagagtgcctggcatttcagagcccaaaatgag
acagagtctgaagaaacaggaggagacatccagaagaagataatgccatggcgactgatg
aacccggatgatgaggtcatggaagagctggaatacgccaagcgtcgccaaagatctgac
ggattaatcctagttacctctcttattgacaaagttccgaacctgggaggactgtgcagg
actagtgaaatctttggagtatcagagtttgtcatcaataaacttagatatgtagaagac
aagatgtttcagtctttgagtgtaacagctcataagtgggtccccatcagagaggtgtat
gagacatgtctacccgagtttctccaacagaagaaatcccagggatacacgttggtgggt
gtggaacaaacagccaatagcgtgccactgaacgacttcaagttccctgttaaaactctc
ctcttacttgggaatgagaaagagggaataccagccgacttgatcggcctgctggatgtc
tgtgtggagattcctcaacagggggtcatccgctcactgaacgttcatgtcagtggcgcc
attctagtgtgggagtacaggaggcagcaaatgatggccgggaaagccgagtga
DBGET
integrated database retrieval system
