Crassostrea virginica (eastern oyster): 111131097
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Entry
111131097 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: TFIIH basal transcription factor complex helicase XPD subunit-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03022
Basal transcription factors
cvn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111131097
09124 Replication and repair
03420 Nucleotide excision repair
111131097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvn03021
]
111131097
03036 Chromosome and associated proteins [BR:
cvn03036
]
111131097
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111131097
Enzymes [BR:
cvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111131097
Transcription machinery [BR:
cvn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
111131097
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
111131097
DNA repair and recombination proteins [BR:
cvn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
111131097
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
N6-adenineMlase
Zn_ribbon_GRF
DEAD
ResIII
nSTAND3
SNF2-rel_dom
YonJ_N
Motif
Other DBs
NCBI-GeneID:
111131097
NCBI-ProteinID:
XP_022334153
UniProt:
A0A8B8E313
LinkDB
All DBs
Position
4:complement(190996..212157)
Genome browser
AA seq
1235 aa
AA seq
DB search
MAANISDIDVITDVEGIDIPECAHGPALMFVRYRGSDAGRKFFACSAFRDRKHCSFFQWC
DEKVSQEKIELRKVINKSLEPKFSHKEYRSRFQSFKKFPKEDRYLCRTCGLFLLPDERSD
HERHDILSGISKAMLKTPSRLFLPLDNNKTYAQYLFSKKTVKFVLEQLKSMNKMRIICLG
APRIHEAIVNEEDGELESYLLDLDFRYMQLYGSKSFARYNMFNHHFFDGDASVNSLTEFM
AGCPHDSVAMVFDPPFGGMVEALSVSIRKLSDLWKTATQAPKDLTVSILWFFPYFLEKRI
IDSFTDFHMLDYKVDYDNHTLFRGDVKKYGSPVRIFTNLPPQQIVLPSDEGYWFCGVCKR
YSAKENLHCDVCDQCPTKYGATYKHCFKCDRCVKPSKQHCDVCKSCQLKDHSCNSPSQGC
HICGALDHKRKECPNKGSHTEIKRLNIDGLLVYFPYDYIYPEQYMYMMELKKTLDAKGHC
ALEMPSGTGKTISLLSLIVAYMKANPLEVTKLIYCSRTVPELEKVVAELKNLMDYYEQQL
GKGKPKILGLALSSRKNLCINPEVIEEREGKTVDALCHKLTASFVRANHKRDPTVPVCSF
YESFDAHGKEIPLPEGVYGLDELQEYGRKKGFCPYFMARHAINHANIVVYSYYYLLDPKI
AEVVSKELSKKAVVVFDEAHNIDNVCIESMSIKITRRTLEKCQQNIDGLNKQIQXGRNKA
KASYLTLSVIXCCDMRTFGISNWISIRLKDCDAERLKTEYQKLVQGLRDANIARETDVIL
ANPVLPDDVLKEAVPGNIRTAEHFLGFVKRFLEYMKIRLRVQHVVSESPPSFLKDCAQKV
CIERKPLRFCAERLNSLMRTLELVEIQDYSALSLLCHFATLVSTYAKGFVLIIEPFDDRT
PTISNPILHFSCMDASIAIKPVFDRFQTVVITSGTLSPLEMYPRILDFRPVTMATFTMTL
ARTCICPMVVSKGNDQVAMSSKYETREDVAVIRNYGNLLVEFCSIVPDGIVCFFTSYIYM
ESTVAAWYEQGIIDQVQKHKLLFIETQDAAETSLALLNYQKACENGRGAVLLSVARGKVS
EGIDFDHHFGRAVIMFGVPYVYTQSKILKARLEYLRDQYQIRENDFLTFDAMRHAAQCVG
RALRGKTDYGIMVFADKRFARADKRSKIPRWIQEHLKDGLCNLSTDEAVQVSKRFLRQMA
QPFSREDQLGLSLLTVEQLDQEDTKKKLQSRMQYV
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atggcagctaatatttccgatattgatgtcataacagacgttgaaggaatagatattcca
gagtgtgcacatgggccagccctcatgtttgtgcgatacaggggatcagatgcagggagg
aagttttttgcatgttctgcttttcgtgacagaaaacattgcagtttcttccagtggtgt
gatgaaaaagtctcccaagaaaagattgaattaagaaaagtcatcaacaaatctttggag
ccaaagttttctcataaagagtacagaagcaggttccaaagctttaagaagtttccaaaa
gaagataggtatctctgtcgaacatgtgggctgtttttgttaccagatgagaggagcgat
catgaaaggcatgacattctgagtggtatcagcaaggctatgctgaagaccccttccagg
ctctttctccctctggacaacaacaaaacttatgcgcaatacttgttttcaaagaagact
gtgaagtttgttttggagcagttaaagagtatgaacaaaatgcgaatcatatgtttagga
gctccaagaatacatgaggccattgtgaatgaagaagatggtgaactagagagctatctg
ttggatttggattttagatatatgcagttgtatggttctaaaagttttgccaggtacaac
atgtttaatcaccacttctttgatggggacgcctctgtgaattctttaacagagtttatg
gctggttgtccacatgacagtgttgccatggtgtttgatccaccctttgggggaatggta
gaggccttgagtgtctccataaggaaattatcagatctttggaaaacagcaacacaggct
cccaaagacttgacagtatctattttgtggttctttccctactttttggaaaaaagaatt
atagattctttcacagactttcacatgttagattacaaggtagactatgacaatcatact
ctgtttcgaggagatgtgaaaaaatatggttcccctgtcagaatattcaccaatcttcct
ccacaacagattgtcctgccatcagacgaaggatattggttttgtggtgtatgcaagaga
tattctgccaaggagaaccttcactgtgatgtttgtgaccagtgtccaacaaaatatggg
gccacttacaagcattgctttaagtgtgacaggtgtgtgaagccgagtaagcagcattgt
gatgtctgcaagtcctgtcagctcaaagaccactcctgcaatagtccttctcaaggatgt
catatctgtggtgctttagatcacaagagaaaagaatgtccaaataaaggatcacacaca
gaaattaaaaggttgaatatcgatggcctactggtttattttccgtatgactatatttat
ccagagcagtacatgtatatgatggagctgaagaaaactctagacgccaagggtcactgt
gcactggagatgccttctggaacaggaaaaacaatttctcttttgtctctaattgttgcc
tacatgaaggcaaatcctctagaagtcacaaagcttatttattgctcaagaacggtccca
gaacttgaaaaggttgtggccgaattgaaaaacctaatggactattatgaacaacaactt
ggtaaaggaaagcctaagatattgggtctagctttgagttcaaggaaaaacttatgcatc
aatccagaagtcattgaggaaagagaaggcaaaacagtggatgccttgtgtcataaactc
actgcatcatttgttcgagcaaatcacaagcgagacccaactgtaccagtgtgtagcttc
tatgagagttttgatgctcatgggaaagaaatccctctacctgaaggagtttatggatta
gatgagttacaagaatatggaaggaaaaaaggattttgtccatactttatggctagacat
gcaatcaatcatgccaacattgtggtctacagctattattaccttctggatcctaaaatt
gctgaagtggtctccaaagaactctctaaaaaggcagtggttgtctttgatgaggcccac
aacatagataatgtctgcatagaatccatgagtatcaaaatcacaaggagaacattagaa
aaatgtcagcaaaacattgacggactcaacaaacaaattcaannaggtaggaacaaggcc
aaggcaagttatctcactttatctgttatttaatgctgtgatatgagaacatttggtatc
tctaattggatttccattagattaaaagactgtgatgctgagagactaaaaacagaatac
caaaagttggtgcaaggactaagagatgccaatatagccagagaaacggatgtgattctg
gctaacccagttctcccagatgatgttctcaaagaggcagtgcctgggaacattagaacg
gcggagcattttctggggttcgtgaagcggttcctggagtacatgaagatcaggttacgg
gtccagcatgtggtgtctgagagcccgccttcctttctcaaagactgtgcccagaaagtg
tgtattgagaggaaacctctcaggttttgtgcagagaggctgaactccctgatgcggacc
cttgagcttgtggagattcaggactactcagctctgtccctcctctgtcattttgccaca
cttgtcagcacttacgctaaaggatttgtactcatcatcgagccatttgatgaccgaaca
ccaaccatcagtaaccccattctccacttcagctgtatggacgcatccattgccattaaa
ccagtgtttgatcgatttcagactgtagtcattacatcagggacattatcacctcttgag
atgtatccaaggattctggatttcaggcctgtaaccatggcaacatttacaatgaccttg
gccagaacctgtatttgtccaatggttgtcagtaaaggaaacgatcaagttgccatgtct
tcaaaatatgaaaccagagaggatgttgctgtaattcgtaactatggtaacctgctggta
gagttctgttctattgtcccagatgggattgtgtgtttcttcaccagttatatctacatg
gagtccacggtagctgcttggtatgaacagggtataatagatcaggtgcagaaacacaag
ctcctatttatagaaacacaggatgctgctgaaacgtcccttgctttgttgaattatcaa
aaggcctgtgagaatggaagaggagcagtgctactttctgtagctcgtggaaaggtctcg
gagggaattgactttgaccatcattttggacgagctgtcatcatgtttggtgttccttat
gtttatacacagagcaaaattctaaaggcccgtttagagtacctacgtgatcagtatcag
atcagagagaatgacttcctgacgtttgacgccatgcgacatgctgcacagtgtgtgggg
agagcactgagagggaaaaccgactacggcatcatggtgtttgcagacaagagatttgca
cgggccgacaagaggagtaagattcctcgctggattcaggaacacctgaaggacggtctc
tgtaatctgtccacagatgaagcagtgcaggtctccaaacgcttcctccggcagatggca
caaccattctccagggaggaccagttgggactgtctctgttgaccgttgaacagctggat
caggaggacaccaagaaaaaactccagtccaggatgcagtatgtgtga
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integrated database retrieval system
