Crassostrea virginica (eastern oyster): 111131208
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Entry
111131208 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: WD repeat-containing protein 41-like
KO
K23610
WD repeat-containing protein 41
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
111131208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cvn04131
]
111131208
Membrane trafficking [BR:
cvn04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
111131208
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR90_beta-prop_4th
Beta-prop_WDR90_POC16_2nd
Beta-prop_Vps41
NBCH_WD40
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_DCAF12
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Ge1_WD40
Beta-prop_Nup120_160
Beta-prop_DCAF4
WD40_CFAP43
Motif
Other DBs
NCBI-GeneID:
111131208
NCBI-ProteinID:
XP_022334336
UniProt:
A0A8B8E4S2
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Position
4:complement(36804121..36810946)
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AA seq
448 aa
AA seq
DB search
MSVWQKIWRKTDQQKDEGKEIVEEIDGEQTCNPYTELYFLQHHTDIVRHLMVIDDRKCIS
AGDDGCVVVWDIQLCMKLAYFEAHSRPITCLLSIEGKKKDSILLITGSSDKHIKVWDIDQ
GKCVQDIVDHGTSVKCLLPVLDNMFVSAGEALHLWAEDGILLDTFSMEAQEADITLLIST
NMKNERFVTACDKELAVYSIKDQLDVNETSYKICLLKKLPXHIEAIRALVPVSDKLFASG
SLDGTILLWSSETFIPVKKLNTMADYKGKANIXPYSVQYIACENQKYLLAAIGCGFALFD
TISNTLLCQKLNAHYSKVTQLTFVCDGLLLATCSEDGSIRLWGQRSHNPGEQLVVKASMG
LSPIERFLDINFGQLHHSRSPEHFPEPALLGECLGHCGSVMRIINHGLEGILSCGADHFV
IAWKNSELQKMKRNQLIQEKVLNPSGIV
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtgtggcaaaaaatatggaggaaaacagaccagcagaaggatgaaggaaaagag
attgttgaggagattgatggagagcagacatgtaatccctacaccgaattatacttcttg
cagcaccatacagatatagtgcgacatctcatggtcattgacgatcgaaagtgtatttct
gcaggagatgatggttgtgtagttgtatgggacatacagctatgtatgaaattggcatat
tttgaagcccattccagacctatcacatgcctattgtctatagaaggaaagaagaaagat
tcaattctactgattacagggtcatctgataaacacatcaaggtttgggacattgaccaa
ggcaaatgtgtacaagacattgtggaccatgggacatctgtcaagtgcctgctcccagtc
ttggacaacatgtttgtgtcggcaggggaggccctgcatctgtgggcagaggacggcatc
cttctggacacgtttagcatggaggcacaagaagctgacataacattgttgatatctaca
aacatgaaaaatgaaagatttgttacagcttgcgacaaagaactagctgtgtattccatc
aaagatcaactagatgtgaatgaaacaagctacaagatttgtttgttgaagaagctccct
ncacacattgaagctataagagcattagtacctgtttcagataaattgtttgccagtggt
tcattggatggtacaatactgctgtggtcatcagaaacatttattccagttaagaagctg
aacaccatggccgactacaaagggaaggccaacatantaccctacagtgttcagtacatc
gcttgtgaaaaccagaaatatctactggcagcaattggttgtggatttgctttatttgat
acaatctcaaacacgctcctgtgtcaaaaactgaatgcacattactccaaggtcacccaa
ttgacctttgtatgtgatggcttgctactggccacatgctctgaggatggcagtatccgg
ctgtggggtcaaaggtcacacaaccctggggaacagctggtagtgaaggcttctatggga
cttagcccaatagagaggtttctggacatcaactttggtcagttacatcacagtagaagc
cctgagcactttcctgagcccgccttgttaggggaatgtctgggacactgtggctctgta
atgaggatcattaaccatggcttagagggaatattgtcctgtggagcagatcattttgtt
attgcatggaagaacagtgaattacaaaaaatgaagaggaaccaattgattcaggagaaa
gtgttgaatccaagtggcattgtttga
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