Crassostrea virginica (eastern oyster): 111131355
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Entry
111131355 CDS
T09197
Name
(RefSeq) replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03030
DNA replication
cvn03410
Base excision repair
cvn03420
Nucleotide excision repair
cvn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111131355
03410 Base excision repair
111131355
03420 Nucleotide excision repair
111131355
03430 Mismatch repair
111131355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cvn03032
]
111131355
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111131355
DNA replication proteins [BR:
cvn03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
111131355
DNA repair and recombination proteins [BR:
cvn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
111131355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
BRCT_2
AAA_30
AAA_16
AAA_5
Rad17
RuvB_N
AAA_14
nSTAND3
AAA_33
AAA_19
Motif
Other DBs
NCBI-GeneID:
111131355
NCBI-ProteinID:
XP_022334549
UniProt:
A0A8B8E4B1
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All DBs
Position
1:complement(12701189..12730854)
Genome browser
AA seq
1143 aa
AA seq
DB search
MLLTDGLKMDLRNFFTVKPSKKTNEGESCNKQEKEGNNNKDSKQKKVETSKSNASKTKST
RKTPQKGKTETEKKKIFVIDSDSDSEFQKKSQNEQQQNVKNKSNGNVKKGKKSQQEDDGD
AADDIKNKKGKRKRLQVSSEEEDEVVVSKHKRKSRRRLDSDSEGEEKEVKKKERKASGKK
SHIDVSDEEKPRKSTLDVFLRSPSPKKQVTATVKESKTETKQKTPVNPMDFLGGDSVKRS
ERTVAAKRTQEDVKKSSVAYDVEMHEDDDFQKTLDMADETKPKKMKAADKEETSCANSKP
SLASKLAAKVQSCDERDVIPDTPVSKSQFTKISEKKESPKKEPLRKTTPKKSSPVKFTPK
KSPNFSSEAAATPKSEETSRSSAKASPTKVSPDTPSMARKGSTYRSYLNREGPRALGSKE
IPEGGENCLESLTFVITGVLESMERDEAKSLIEKYGGKVTGSISKKTSYLVAGRDSGESK
LTKAKSFGTKQIDEDGLLNLIKTLPGKRSKYEIKAEEQIKKESSFSQKTKSETTPIKSLA
KESSQSSRKGSQEDGESLPSGQSSGTARPTESSLMWVDKYKPTQLKQIIGQTGDKSNAKK
LLHWLTNWHKSRAAGVKPQGKFFNKNDDGSGFRAALLSGPPGIGKTTTATLVCKEAGFSY
VELNASDTRSKKSLKGEVAEALDNKTIVDFIGVTSSTTQGRKHCLLMDEVDGMAGNEDRG
GLQELVALIKSSHIPIICMCNDRNNPKMRTLSNYCFDLRFQRPRVEQIKGAMMSVAFKEG
LKIPPPAMNEIILAANQDIRQVLHNLSMWTAGDKNLTYDQAKKDSGNAKKDFKLGPFDVC
RKVFVGGEETAGMTINDKSDLYFHDYNIAPLFVQENYIHVIPYAAKGNMGRHLSQLARAA
DSLCDGDLVDRCIRSNQSWNLLPTAAMFASVIPGEHMRGSLPQMVGFPSWLGKNSTTGKT
DRILQELRTHMSLPTSANKLSLNLDYLPFLRKFLTAPLVLKENDGIAEVIDLMDKYDIIK
EDFDNILEVTKWPNSDDPMSLLSSKTKAAFTRTYNKEVHLTPYATGTLTKKGRGGGAPVG
EDYGLEGEDEGEGTAAVPESDEENSNDLELDSMIKAKKPKGKEKETKQTSSKGKGKGKGK
GKS
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgctactaacggatggtttgaagatggatctaaggaatttttttactgtaaaacctagc
aagaaaactaatgaaggagaatcttgtaacaaacaagagaaggaaggaaataataacaag
gacagtaagcagaagaaagtagaaacctccaagagtaatgcctctaaaaccaagtcgaca
agaaaaactccacaaaaaggcaaaacagaaacggaaaaaaagaaaatttttgtgatagac
agtgactcggattcagaatttcagaaaaaatcacagaatgaacagcaacaaaatgttaag
aataaatcaaatggcaatgttaagaaaggaaagaaatcccagcaggaagatgatggtgat
gctgctgatgatatcaaaaacaagaagggcaagaggaaacgactgcaggtaagcagtgaa
gaagaagatgaagtcgtagtctctaaacataaacggaaatccagaagaagacttgactct
gactcagaaggagaagagaaagaagtgaaaaagaaagagagaaaagctagtgggaaaaag
tcacatatagatgtctcagatgaagaaaaaccaagaaagtcaacattggatgtatttttg
agatctccaagtcctaaaaagcaggttactgcgacagttaaagaatcaaaaactgaaacc
aaacagaagactccagtgaatcctatggattttttgggaggagattcagtgaaacgctca
gaaagaacagtggcagctaaacgtactcaggaagatgtcaaaaagtcttctgtggcctat
gatgtagagatgcatgaagatgatgatttccagaaaactttagacatggctgacgaaact
aaacccaaaaagatgaaagctgctgataaggaagaaacatcatgtgcaaacagtaaacca
agtctagcaagcaaattggcagcaaaagtccaatcctgtgatgagagggatgtgattcca
gacacgcctgtttcaaagagtcagtttacaaagatatcagagaaaaaagaatcgccgaag
aaagaaccactcagaaaaaccacccccaagaaatcttctcctgtgaagttcaccccaaag
aaatctccaaacttctctagtgaagcagcagccacacccaagtctgaagaaaccagcaga
tcgtccgcaaaagccagtcctaccaaagtatcccccgacaccccttccatggcaaggaag
ggcagcacctatcgcagctacctgaaccgagagggaccccgggcactgggatccaaggag
attccagaggggggagagaactgtttggagtccttgacctttgtcattacgggggtgttg
gaatccatggagagagacgaggccaagagtctgatagagaagtacggaggtaaagtcacg
gggagcatcagcaagaagaccagctacctggtggctgggagggactcgggggaaagcaaa
ctgaccaaggccaaaagctttggaacaaaacagattgatgaggatgggttactgaactta
ataaaaacacttccaggaaagagatccaagtacgaaattaaagcagaggagcagataaaa
aaggaatcgtctttctctcagaagactaagtcggagacaactcccattaagtcattagca
aaggaatcctcccagtctagtcgcaaaggttcccaggaggatggggagtcacttcccagt
ggtcaatcaagcggaacagcgcggccaaccgagagcagcctgatgtgggtagataagtac
aagcccacgcagttgaaacagatcattggacaaactggggataagagcaacgccaagaag
ctgcttcattggttgacaaactggcacaagagtcgggcagcaggggtcaagccgcaaggt
aaatttttcaacaaaaatgatgatggctctggattccgagcggccttactctctggcccc
ccaggaattggaaagaccaccacagcaacccttgtttgtaaggaagctggattttcttat
gtagaactgaatgcatcagatacaaggtcaaagaagagtttgaaaggagaagtagctgag
gcattggataataaaacaatagtggatttcataggtgttactagcagcaccacacaaggc
aggaagcactgtctcctcatggatgaagtggatggaatggcgggcaatgaggaccgagga
gggctgcaggagctagtggccctcatcaagtcctcacacatacccatcatctgcatgtgt
aatgaccggaacaaccccaagatgaggacactttccaactactgctttgatctccgattt
cagcgacctcgtgtggaacagatcaagggtgctatgatgtctgtggcattcaaagagggc
ctgaaaattccacccccagcaatgaatgaaattattttagcagccaaccaagatattcgc
caggttttacataatttatccatgtggactgctggggataaaaatctaacatatgaccag
gccaagaaggattctgggaatgctaagaaggactttaaactgggtccttttgacgtgtgt
cggaaagtgtttgttggtggggaggaaactgctgggatgaccatcaatgataaatctgat
ctgtactttcatgattacaacattgctcccctctttgtccaagaaaactacatccatgtt
attccatatgcagcaaaaggcaacatgggtcggcatttgtcccagctggcccgggcagcg
gacagtctgtgtgacggtgacctggtggacaggtgtattcgttccaaccagtcctggaac
ctgctgcctactgctgcaatgtttgccagtgtgatccctggggagcacatgaggggcagt
ctgccacagatggtggggtttcccagctggctggggaagaattctaccacagggaagacg
gaccgcatcctacaggaactccgaacacacatgtccctaccgacttcagcaaataagttg
agtttaaacctggattatctgcccttcttacgaaagtttctgacagcacccttggtgctc
aaagagaacgatggaatcgccgaggttattgacctgatggacaagtatgacatcatcaag
gaggactttgacaatattctggaggtcacaaaatggccaaatagcgatgatccaatgtct
ttgctcagttcaaaaacaaaagctgcattcacacgaacttacaacaaggaggtccatctg
accccgtatgccacagggaccctgaccaagaaaggacgagggggtggagcacctgtgggt
gaggactatggtttggagggagaggatgaaggagaggggacagcagcggtcccagaaagt
gacgaggaaaatagcaacgatctggagttagactccatgattaaggcaaaaaaaccaaaa
gggaaggaaaaggagaccaagcagacatcatcaaaggggaaagggaaggggaaaggaaag
gggaaaagctga
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integrated database retrieval system
