Crassostrea virginica (eastern oyster): 111131788
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Entry
111131788 CDS
T09197
Name
(RefSeq) DNA mismatch repair protein Msh3-like
KO
K08736
DNA mismatch repair protein MSH3
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
111131788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111131788
DNA repair and recombination proteins [BR:
cvn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
111131788
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
CdaS_N
Metal_resist
Motif
Other DBs
NCBI-GeneID:
111131788
NCBI-ProteinID:
XP_022335200
UniProt:
A0A8B8E4T3
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Position
4:complement(55988728..56000711)
Genome browser
AA seq
1124 aa
AA seq
DB search
MSKKKISLTKLKPFAEKASEKKPKQITISKFFSTTAQSEVAQDEKEPGCRGRGVAPIIIT
DDDPLHNPDTSCTKKGRKRAKENETRSNECKRQCTRSSDEQLTTSEDLPGICKEKKYSND
IIECNIRVSELTKSKLDRFQINENSDSSEVKDIKSYVPRQPTININIDDECIENGKNATI
SISDDENEPSTSELVPGLQKFAASKQSVKRGGNAVAPVNKRTKTKYTPLEQQYVDLKEKN
PDTLLFVECGYKYRFFGEDAENAANVLKIYCHQDHNFMTASIPVHRLFVHVRRLVAAGYK
VGVVKQTETAALKACGENKSGPFTRQLTAMYTKSTLFGQDVDPVNCSEELQGEINLEESH
SSEYLMCVYDVPHDEGVKHQTIGILAVQPSTGDVIYDSFDDSDLRSQLETRILHIQPVEL
LSSKTLSDATQKLLSDITTLRSTDDDRLRQEFCDDEIFEFRSAFTRVSEFYKAHGKDPSV
VQLVINLPAAVISCLAAVLNYLEDFGLQKALQDTSNFNQFSEKSKFLYLPGNTVRNLELF
CNQNDGREKNSVYWLMNQTVTKFGSRKLKAWLTQPLLNIKEIIQRQEAVNTIIDNLNCSV
LSRFRSILGKSPDLERGLCSIYHEKCSVQEFYAVCRSLSTVLCEVEGVRKWLSENSCPLL
QTIFSEIPDLLSDVIQYKEALSEAGVKANDKTNIFINEENFPEIQRRKDQIQAVRKEIVD
HRREVRILLRQPSLDYVTVMGTEYLVEVKNAHLNLVPKDWLKVSSTKTVSRFHTPFIQEK
VRELHQLQEQLLLDSQTAWVSFLQEFNEGFRRYKTAVDYLAAYDCLFSLASVAKHQGFCR
PEMSADDVSLEIKQGRHPVIQHLIGEGGQYVPNDTLLQGCSERVMIITGPNMGGKSSYIK
QVAIICILAQIGSYVPADTARIGILDAIFTRMGAADEIFSGRSTFMVELQETSDIISQAT
ARSLVILDELGRGTSTHDGVAIAYATLDYFISKIQSLTLFVTHYPILAEFEKLYHSNVGN
FHMGFIVNETNSSGDEDNKQVITFLYQLVRGMAARSYGLNVARLAGINQDIIQSAELLSS
QLEEKVQKRRFQMEAFRMCMQTTDDKELLQYLKTFHETYNYASE
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaagaaaataagtctgacaaaactgaagccctttgctgaaaaggcttccgag
aagaaacctaaacagatcaccatttcaaagtttttctcgaccactgcacaatcagaagtt
gcgcaagatgagaaggaaccaggttgccgtggaagaggggttgctccgattattatcact
gacgacgacccgctacataacccagatacctcgtgtacaaagaaagggaggaaaagagcc
aaagaaaatgaaacaagaagtaatgaatgtaaaagacaatgtacaaggtcaagtgatgaa
caacttactacctcggaagatctcccaggcatttgcaaagaaaagaaatattcaaatgat
attattgagtgcaacatcagagtgtccgaattgaccaagtctaaacttgacagatttcaa
ataaatgaaaattcagactcatctgaggtcaaggatataaaatcatatgtccccagacaa
ccaacaattaacattaacattgatgatgaatgcattgaaaatggtaaaaatgctacaatt
tccataagtgatgacgagaatgaaccttctacctcagaactcgtaccgggattacagaaa
tttgctgcatctaagcagtctgtgaaacgtggaggaaatgcagtagccccagtaaataaa
agaacaaagaccaaatacacacccctagagcagcagtatgtagacctaaaggaaaagaac
ccagacacccttctgttcgttgagtgtggttacaagtacagattttttggagaagatgca
gagaatgcagctaatgtattaaagatctactgccatcaggaccacaactttatgactgct
agcattcctgtacaccggttgtttgttcatgtgagacgacttgttgctgcagggtataag
gtgggagtggttaagcagactgaaacagcagccttgaaggcctgtggggagaacaaaagt
ggtccatttactcgtcagctaacagccatgtatactaagtccaccctgtttggtcaagat
gtggatccagtgaattgctcggaggagttgcaaggggagataaacctggaggagagccat
agcagcgagtatttgatgtgtgtttatgatgttccccatgatgaaggcgtcaagcaccag
actataggtatccttgctgtgcagccatcaacaggggatgtaatctacgacagttttgac
gactcagacctccgaagccagttagagaccagaattcttcacattcagcctgtagaatta
ttaagcagcaaaactctgtctgatgcaactcagaaacttttatcagacattaccactctt
aggtcgacggatgatgatagattgagacaggagttttgtgatgatgaaatatttgaattt
agatcagcattcactagggtttccgaattttacaaggctcatggaaaagacccctcagtg
gttcagctagtgatcaaccttcctgctgcagtcatcagctgtctagcagcagtgctgaac
tacctagaagactttggccttcagaaggccttgcaggacacaagtaatttcaaccagttc
tcagaaaagtccaaatttctttacctacctggcaacacagtgaggaatctggaactcttc
tgtaaccagaatgatggaagggagaagaactcggtctattggttgatgaatcaaactgtc
accaaatttgggagcaggaaactcaaggcctggctgacccagccacttctgaatatcaaa
gaaattatccaaagacaggaagcagtgaacacaattattgacaacttgaactgtagtgtc
cttagtagatttaggagcatccttgggaaatctcccgacttggaaaggggactgtgttcc
atatatcatgaaaagtgtagtgtacaggaattctatgcagtgtgcaggtctttgtcaaca
gttttgtgtgaagtggaaggagtaaggaaatggctgtcagagaactcctgtccattactg
cagaccatcttcagtgaaatcccagacctactctctgatgtaatccagtacaaagaggca
ctcagtgaagctggagtgaaagccaatgataagaccaatattttcattaatgaagaaaat
tttcctgaaatccaaaggagaaaagatcagattcaggctgtgagaaaagaaattgtagat
catcgacgtgaggtcagaattctgcttcgtcagccatctctggattatgtcacagtaatg
ggaacagagtatctagtagaagtcaagaatgctcatttgaatctggtacccaaagactgg
ctcaaagtcagcagcacaaaaactgtcagcagatttcacactccatttattcaagagaag
gtccgagaactgcatcagctccaggaacagttgctcctagattcccagacagcttgggtg
tcatttctacaagagtttaatgaaggattcaggcgatacaaaacagctgtggactatcta
gctgcctatgactgcttgttttccttggcttctgtggcaaagcatcagggattctgtaga
ccagaaatgtctgcagatgatgtcagtttagagataaaacaagggagacaccccgtgatt
cagcacttgattggggaggggggtcagtatgtgcctaatgatacccttctacagggttgc
tcagagagagtaatgataatcacaggaccaaacatggggggcaagagctcttacatcaaa
caggtcgccattatatgtatccttgctcaaattgggtcctacgtaccagccgatacagcc
agaataggcatcctggatgccatatttacaagaatgggggcagctgatgagatattcagt
ggtcgcagcaccttcatggtggagcttcaggaaacctcagacattatatcacaggctaca
gctcgttcactggtgattttagacgaactggggaggggtaccagtacacacgatggcgta
gcaattgcctatgcaacactggactacttcatatcaaagattcagagtctaacattgttt
gtcacacattatcccattttggcggagtttgaaaaactctaccattccaatgtaggtaac
tttcacatgggattcatcgtcaatgaaaccaactcttcaggtgatgaagacaacaaacaa
gtcatcacttttctctaccaacttgtgagaggaatggccgccaggagttatggattaaac
gtggctcgacttgctggcatcaatcaggacatcattcagagtgctgaactattgtcatct
cagctcgaagaaaaagtgcagaagagaagatttcaaatggaagcctttcggatgtgtatg
cagacaacagatgacaaggaactacttcagtacctgaagacattccatgaaacttataat
tatgcttctgaataa
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