Crassostrea virginica (eastern oyster): 111132055
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Entry
111132055 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: RNA-binding protein NOB1-like
KO
K11883
RNA-binding protein NOB1
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111132055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cvn03009
]
111132055
03051 Proteasome [BR:
cvn03051
]
111132055
Ribosome biogenesis [BR:
cvn03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
111132055
Proteasome [BR:
cvn03051
]
Eukaryotic proteasome
Assembling factors
Other assembling factors
111132055
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PIN_6
Zn_ribbon_NOB1
WRNPLPNID
Motif
Other DBs
NCBI-GeneID:
111132055
NCBI-ProteinID:
XP_022335400
UniProt:
A0A8B8E5D8
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All DBs
Position
5:25610017..25619036
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AA seq
444 aa
AA seq
DB search
MSNSKIKHVVADSGAFIRNAPLKDIGEKVYTVPKVVNEIKDKATLQRLQFLPYQLTPKTP
SPESIRIVSEFSKKTGDYSSLSAVDIQVIALTYQLEKENNGAAHIKTVPDSKVEWTASKA
MLEKPTSIAGFYLDKGKHNNRTDSECTCTSDLSEQQDVSKEQSEECNTTTKNNTHVCQSP
DKQVESSYTGRSRKRLTWEFPSKLPSEKEEREEGLTVTAEMLEETEEDEGIEEDEEDDDD
DDNDGWITPGNIRSLKQKMANVDQEKKAVEVGCVTTDFAMQNVLIQMGMNVISIDGMLIK
RAKSFVLRCFACMKITKDMLKEFCPYCGNRTLQKVSMTVEEDGSIRYFLSRRKPISTKGM
KYQLPLPRGGKHANNPVLVEDQPLPQQRAAKKKQQQLDVFDPDFVAGQSPFALNDITSRA
AQLGIKNNSRQFNKRQQNKHGRRK
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacagcaaaataaagcacgttgtggcagactcaggggcatttattcgcaacgcc
ccgctcaaggacattggagaaaaagtttatacagttccaaaagtagtcaatgaaatcaag
gataaagctactcttcagagattacaatttttgccatatcagctaactccaaaaactcct
tcaccagaatccatcagaattgtatctgaattttccaagaagacaggagattacagcagc
ctttcagctgttgatattcaagtcattgctttgacataccagctagaaaaagaaaataat
ggggcagcccacatcaaaactgtgccagacagtaaggtcgaatggacggcttccaaagca
atgctggaaaaaccaacatcaatagccggattctacctggataaaggtaaacacaacaat
agaacagactcagagtgtacctgcacgtctgacttgtcagagcagcaggatgtgtcgaaa
gaacagtcagaggaatgcaataccacgaccaaaaataacacacatgtctgtcagtcaccg
gacaagcaggtggaatctagttatacaggaagatccagaaagagacttacatgggaattc
ccaagtaaacttccctcagaaaaggaagaacgagaggaaggccttactgtcacagccgaa
atgttggaggagacagaggaagatgaaggaatcgaggaggatgaagaggatgatgatgat
gacgacaatgatggttggataacgcctggtaatattagaagtctcaaacagaagatggct
aatgttgatcaggagaaaaaagctgtggaagttggatgtgttaccacagattttgctatg
cagaatgttctcattcagatggggatgaatgtgatctccattgatgggatgctgatcaag
agagccaaaagttttgtgttacgatgttttgcatgcatgaaaataacaaaggatatgctg
aaagagttttgtccttactgtggaaatagaactctgcagaaagtttccatgactgttgag
gaagatggcagtatccgctactttctctcccgcaggaaacccatatcaaccaagggaatg
aagtatcagttgccactgccaaggggaggtaagcatgcaaacaaccctgtgttagtagag
gatcagccattaccgcaacagagagctgccaagaagaagcagcagcaactggatgtgttc
gatccagactttgtggctgggcaatccccttttgccttgaatgacattaccagtagggca
gcacagcttggaataaagaataacagtcgacagtttaataagcgccaacagaataaacat
ggaagaagaaaataa
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