Crassostrea virginica (eastern oyster): 111132058
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Entry
111132058 CDS
T09197
Name
(RefSeq) autophagy-related protein 16-1-like
KO
K17890
autophagy-related protein 16-1
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn04136
Autophagy - other
cvn04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
111132058
04136 Autophagy - other
111132058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cvn04131
]
111132058
03029 Mitochondrial biogenesis [BR:
cvn03029
]
111132058
Membrane trafficking [BR:
cvn04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
111132058
Others
Specific organelles associated proteins
Auto phagosome
111132058
Mitochondrial biogenesis [BR:
cvn03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
111132058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
ATG16
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR3_2nd
EIF3I
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_2nd
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
WDR90_beta-prop_4th
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
WD40_MABP1-WDR62_1st
eIF2A
Beta-prop_SCAP
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_DCAF12
Tricorn_2nd
Beta-prop_WDR75_1st
Beta-prop_ACSF4
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_WDR41
Beta-prop_NWD2_C
Beta-prop_Nup120_160
DUF1664
Motif
Other DBs
NCBI-GeneID:
111132058
NCBI-ProteinID:
XP_022335410
UniProt:
A0A8B8E5F0
LinkDB
All DBs
Position
5:complement(72610162..72622138)
Genome browser
AA seq
549 aa
AA seq
DB search
MDPKALHWKHSLLEQLRQRDKREKKPFESLVSSHWKHFETAQSLKSKNVQLTVETEKLKE
ENLGLQIKVEQGGGGGNSQALEQKLFKLQEELTELHRRRGENTQQIIDLNNSLQDKEKEL
QGRDARLNDLLANELALKMEIKNLESTIVELEATNQMLKDEHQALQLTYTGLEEKFRKVE
LDNQHLLERWIKQQAKMADQLNAENDQFMLARQHKLRQELEEAARENIQILPEKQTGVYV
PTTIPICLSASLPSKAQCKFDAHDGEVNAVRWSPSGAMFATGGADRKIKLWEVINGKCEC
KGTLTGSNAGIMALDFDLEESTILGASNDFASRVWSLTDHRVRHTLTGHSGKVLAAKFLG
DSNKVVSGSHDRTLKIWDLHSRSCVKTIFAGSSCNDLVTIHGTNIVSGHFDKRVRFWDSR
MDSNTNEILLQGRLTSLDLSPDKMSLLCCTRDDTLKVLDLRMNQISTTLAHDDFKVGCDW
SRAVFSPDTSYAVAGSSDGAIYIWNIKKGKVEKILKEHAHSVIACSWHPVGSYVLSCEKQ
RKTVLWSDI
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggatccaaaggctcttcattggaaacactcgcttttagagcaacttcgacagcgggat
aagagggaaaagaaaccattcgagtctctagtatcttcacattggaaacactttgaaacc
gctcaatcattaaagtctaaaaatgttcaactcacagtggaaacagaaaaacttaaggaa
gaaaaccttggtttgcaaatcaaagttgagcagggtgggggaggtggaaacagtcaggct
ctggaacaaaaactttttaaactccaggaggagcttacagaattacacaggaggagaggg
gagaacacccagcaaataattgacttgaataattcacttcaagacaaggaaaaagaattg
caaggaagggatgccagattgaatgatttacttgccaatgaactggctttgaaaatggag
attaagaatttagaaagtaccattgtggaattagaggccacaaatcagatgctgaaggat
gagcaccaggctctccagttgacatacaccggtctggaggagaagttcaggaaggtggaa
ttggacaatcagcatctgctcgagcgctggatcaagcaacaggccaagatggccgaccag
ctcaacgcagagaatgaccagttcatgctagcacggcagcataaactgcgccaagaatta
gaggaggcagctcgggaaaatattcaaattttaccagagaaacagacaggggtgtatgtc
cctacaacgattcctatctgtttaagtgcctcgctaccttccaaagcccagtgtaaattt
gatgctcatgatggagaagtgaacgctgtccggtggagtccatcaggagcaatgtttgcc
acaggtggtgctgacagaaagattaaactgtgggaagtcataaacggtaaatgtgagtgt
aagggtactctaacaggcagcaatgcaggcataatggctctggattttgatctagaggaa
agtacaattttaggagcatcaaatgactttgccagtagggtttggtcgctgacagaccac
agagtcaggcataccctgactggtcacagtggaaaagtccttgcagctaaattcctcggt
gacagtaataaagtggtctcaggaagtcatgacagaaccctgaaaatatgggacctgcac
agcagatcttgtgtaaaaaccatatttgctggctccagctgtaatgatctggtgaccatc
catggaaccaacattgttagtggccattttgacaaaagagtgaggttctgggatagtcgt
atggacagcaacaccaatgaaatactgctacagggaaggttgacttccctagacctctct
cctgataagatgagtctgctgtgctgtacaagagatgacactcttaaagtgttggatttg
agaatgaaccaaatatctacaaccttagctcacgatgatttcaaagttggctgtgattgg
tctagagctgtttttagtccagatactagctatgcggttgcagggtcaagcgatggtgca
atatatatctggaatatcaaaaaaggaaaagtagaaaaaatcctcaaagagcatgcgcat
tctgtgatagcttgttcctggcatccagtgggatcctatgttttaagttgtgaaaagcag
cgtaaaactgttctatggtcggacatctga
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