Crassostrea virginica (eastern oyster): 111132118
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Entry
111132118 CDS
T09197
Name
(RefSeq) exosome component 10-like
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111132118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111132118
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
111132118
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Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
111132118
NCBI-ProteinID:
XP_022335537
UniProt:
A0A8B8E4N1
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Position
5:64515769..64527136
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AA seq
828 aa
AA seq
DB search
MSASNNEGKEEQIAGFQDVNAFTQQALKSVVQATRVSNDLPAAGDDYDYYSSFQRVRDIL
DVEGKRVLNIIQNVLRYHNVKGNMTTSSEATDVDDKFDVLMDANDHILEKVGSYLDESAG
LKKKEENLIIATATPKVKTTPTASWNKKNSGSPSLSQYKLLTARNIQRPQVKFRDKIDNE
NRPFVPRITQKPNALKSLEESLKLPEDVAADMLGDSEFMYPHPYKYELSVFKPTERQLQD
KKPEKPLPLEDTPLTFVATVTELETVLRKLRKEETVAVDLEHHSYRTFQGITCLMQISTA
TEDFLIDTLALRNDLSPLNEIFTNPAIVKIFHGADSDIDWLQRDLGLYVVNMFDTGQAAR
VLNHSRFSLAHLMEHYCDVTTDKQYQLADWRIRPLPAELKKYAREDTHYLIYIYHCMKQE
ILARGNDQKNLLHSVLQRSTEICAKVYKKPVFKEDSYLELYRKSKKVFNSRQLQALQRLY
QWRDKLGRMEDESTGYVLPNHMLLQIADILPREQQGIFACCNPIPPLVRQFLPEIHSFIL
EAREAPLLKVSLPQEQKPSSYQHPKYDPAHLLNCPHDTSHMSESQDPPAIPDVSMVTKSS
MLFGTNNSGLIVRVKAKPLLTAFGEKRDKKTASKGQRMAAALAASFISPFTRFLPDDGTT
TAESEAQSLGSWSLKKHTVKRKRSPSPPAGPLEKKVKADPTPKQPDLSVREMSAQQKQRD
RQSDGHVNLRLADDDKPKKKKAKKKEKREKQEDAEFAAFDYTQADKNIFLGGDSKKKKQD
VFNPYASLQGKGGQKVGRSNQAFVRSQKSHSYKQDGKGGKQNSWPKKK
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcctcaaacaacgaaggaaaggaagagcaaattgctgggtttcaagatgttaat
gcgtttactcagcaagcccttaagtctgtggtacaggctacccgtgtatctaatgaccta
ccagctgctggggatgactatgattattattccagtttccagcgagtgagagacattctt
gatgttgagggcaaacgtgtcctcaatatcatacagaatgtacttcgttaccacaatgtg
aagggaaacatgacaacatcctcggaagccactgatgttgatgataaatttgatgtttta
atggatgctaatgaccatatattagagaaagtggggtcttaccttgatgagtctgctggg
ctgaagaaaaaagaggaaaacttaatcatcgccacggcaactccaaaagtgaaaaccact
cccactgccagttggaataaaaagaattctggatcccccagtttatcccagtacaaactg
ttgacagccagaaacatccagaggccccaagtcaagttcagggacaagatagacaacgag
aaccgaccatttgtccccagaatcacccaaaaacccaacgccctcaaatcattagaagag
agtctgaaacttccagaggatgtggcagcagacatgttgggggattcagaatttatgtac
ccccatccctataagtatgagctaagtgttttcaaaccaacagagcgtcaacttcaggac
aaaaaaccagagaaacctttgccgcttgaggacactcctttgacctttgtcgccacagta
actgaattggagacggtcctacgcaagcttaggaaagaggaaacggtggcagtggatcta
gagcatcactcctaccgaacattccaaggaatcacctgcttgatgcagatttctacggca
acagaggacttcctgattgacaccttggctcttagaaatgacttgtctcccctaaacgag
atattcacaaacccagcaattgtgaaaattttccatggagcggacagtgacatcgactgg
ctacagagagatctgggactgtatgtggtcaatatgtttgacactggccaggccgctcga
gtgctgaatcactctcgcttctcattggctcatctcatggagcattattgtgatgtcaca
acagacaaacagtatcagctggctgactggagaatcaggcccctcccagcggagttgaag
aagtacgcccgggaggacactcattacttgatctacatctaccactgcatgaagcaggaa
atcctggcccgcggcaatgaccagaagaacctgctccactccgttctacaacgcagcaca
gaaatttgtgccaaggtgtacaagaagccggtgtttaaggaggactcgtacttggagttg
tacaggaagagtaagaaagtgtttaactcccgccagctgcaggcgctacagaggctgtac
cagtggagggacaaactgggcaggatggaggacgagagcacggggtacgtgttgcctaac
cacatgctgctccagatcgcggacattctacccagggagcagcaggggatctttgcctgc
tgtaaccccatccccccgcttgtgcggcagttcctgcctgagatccacagcttcattctg
gaggctcgcgaagccccgctactcaaggtctccctgcctcaggaacagaaaccaagctcc
taccagcaccccaaatacgaccccgcccacttactgaactgtcctcacgatactagtcac
atgtcagagagtcaggatcccccggccatcccagatgtctccatggtgactaagtcctcc
atgttatttggtaccaataactcgggtctgatagttagggtcaaggccaaaccacttctc
acggcctttggagagaagagggacaagaagactgccagtaagggacagagaatggccgca
gccctggccgcttccttcatcagtccatttaccaggttccttccggatgatggtaccaca
actgcagaatcagaggcacaaagtttaggaagttggtccctgaagaaacacacagtgaag
aggaagcggtcccccagtccccctgcaggtcctctggagaagaaagtgaaagctgaccca
accccaaagcagcctgacctgtctgtcagagagatgagtgcccagcagaagcagagagat
cgacagagtgacggccatgtgaatcttcgactcgctgatgatgacaaacccaagaaaaag
aaagccaagaagaaagagaagcgagagaaacaggaagatgccgagtttgctgcttttgac
tacactcaggctgacaagaatatattcttaggtggggacagtaaaaagaagaagcaggat
gtattcaatccttatgcctccttacagggcaagggaggccagaaggttggtcgatctaat
caggcctttgtcaggtcgcagaaaagtcacagctataaacaagatggaaagggaggcaag
cagaacagctggcccaagaagaaatga
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