Crassostrea virginica (eastern oyster): 111132857
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Entry
111132857 CDS
T09197
Name
(RefSeq) transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvn03021
]
111132857
03036 Chromosome and associated proteins [BR:
cvn03036
]
111132857
Transcription machinery [BR:
cvn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
111132857
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
111132857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
Tex_central_region
S1
HHH_3
Tex_YqgF
HHH_9
SH2
Spt6_S1
Tex_N
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
111132857
NCBI-ProteinID:
XP_022336464
UniProt:
A0A8B8E8J5
LinkDB
All DBs
Position
5:53976716..54005868
Genome browser
AA seq
1715 aa
AA seq
DB search
MDFMEDQAEESDVNSEDEGGRSDASGSGSDSGGKSKSKKKKKSRQIISDSDEEEEEEEDE
EQIRKEMEGFIKDEDDEEEEEEGDESGSETGKRKHEDSEESDDQLEDEDYDLIEENLGVK
VKRKPKLKRIRMVSDEEDSDKDEMNEERERDALADELFDGEADDSEAPRERISNEFDNLD
VDEEEDEDDMDNFIVDENGEPIKNRLKKKKHIIHSDSALQEAQDIFGVDFDFDEFGYGEE
DEFEEEDEYDEEGEDEEGRPRPKKGGKKKSQKKTIYEAFEPSEIERGFFTDQDNEIRVTD
MPERFQLRQVPVKPTEEGEIEEESEWIYKQAFSTPPISQQNLLEQESGTYNRRGPSMINK
IKKAIDFMRNQHLEVPFIAFYRKEYVESDLNINDLWKVWQWDEKWTQLRTRKQNLIKLFE
KMQNYQFDTNSDPDKVLETNVRPLTDEDLDRVRNVQTMEELKDVYQHFLLYYGLDIPKMK
MSQTKKKSESEKEDGEADPEPEIEPTDTIKHATRKTGYNICQEKKIDDIAEKFGLTPEQF
GENLRDNYQRHDVEQYPIEPLELAKEKICGQFPTEEEVLLGARHMVAMQISHDPTVRQIV
RQAYYERAKITVRPTKKGIKEIDESHACYSMKYLKNKPVRELKDEQYLKLVMAEDDRLIT
MTFHIDGESETVQTYFEEIRQLYYRDEFSHLVQQWNLQRTQALERALTKLLYPQMEKELR
AKLLSEAKDGIVKACCRKLYNWLKVAPYQADQQLEDNNYEDEGLRVLGVGYSTDRDTAAF
GVLIDPEGQVTDFLRLEYLCMRKNAFREVDRKGRENDLSKLKEFISTKKPHVVAVTAESK
DALRIVEDIQRLIQELTEEAEMPAINVELVDNEVAMVYENSNKGQSDFREYPVVLRHAIS
VARRLQDPLIEFAQLCNTDEDILCLKYHPLQDQIPKDVLINALTLEFVNRVNEVGVDINR
ALAHPHTAPLVQFVCGLGPRKGAHLLKILKQNNIRLENRTQLVTLCHMGPKVFINCAGFI
KIDTFSLMDSTDCYVEVLDGSRVHPETYEWARKMAVDALEYDDTAEDANPAGALEEILES
PDRLRDLDLDAFAEELERQGYGDKHITLYDIRAELNHRYKDLRTPYRSPLNEERFNMITK
ETPETFYVGKLVLGRVIGIAHRRPRGEQLDQANPVRNDETGLWQCPFCNRSDFPELSEVW
SHFDAGSCPGSAVGVKIILDNGVSGFLHTKNISDKHIKSPEERVKTGMTIHCRITKIDID
RFQVDLTSKSSDLMDADNHWRPPKDLYYDQEQEDKDKEKEEEKVKHKARQTYVKRVIAHP
SFHNVGYRECEKLLENMDQGEAIIRPSSKGADHLTVTWKVGDGIMQHIDVREEGKENAFS
LGSSLFIGTEEFEDLDEIIARHIQPMAAFARDVMNFKYFKESDGGKREILEKFLLEEKKK
GPSRIPYYLTLTKQYPGKILLSYMPRIKSRHEYITITPDGLRYRQQNFHSLNSLMRWFKE
HFRDPIPGTPASARTPVPGSNFATPSINLQGVDAATIQRAAAGLPSNIYNTLAQVASATP
RVSRMTPGVTPGATPQVAGGFSNFNVPIGTPMMTPMMTPSHPMTTPANQPAQTPSYRPTP
RAATTPAWPGATPKATPRVGSTTPQHQGQTPRAGPSTAGMDWAKAAQMWAKRSGSTKPTT
PRHGQSPRGVRPSPRPSPRHEGYGGGDSTPLFDER
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atggatttcatggaggaccaagctgaggagtcggatgtcaattcggaagacgaagggggg
aggtccgacgcctcaggatctgggagtgattccggtgggaaatcaaaatccaagaagaaa
aagaagagtcgacagatcatctctgatagtgatgaagaggaagaggaggaagaagatgag
gaacagatcagaaaagaaatggaaggctttattaaagatgaagatgatgaagaggaagag
gaggagggcgatgagtcaggaagtgagacagggaaacgtaaacacgaggactcggaggaa
tctgatgaccagctagaggatgaagactacgacctcatcgaggaaaatctgggggtcaaa
gtcaagcgaaagccaaaactaaaaagaatccgaatggtgtccgatgaagaggactctgat
aaagatgaaatgaacgaggaacgggaaagagatgccttggcagatgagttgttcgatggt
gaggcagatgattcggaagcccctcgagagagaatcagcaatgagtttgataatctggat
gtggatgaagaggaagatgaagatgatatggataatttcattgttgatgagaatggggaa
ccgattaaaaacagattgaagaagaagaaacacattatccactcggactcagcactacaa
gaggcccaggacatctttggagtggactttgacttcgatgagtttgggtatggagaggag
gatgagtttgaggaggaagatgagtatgatgaagagggtgaggatgaggaagggaggccc
agacccaagaaaggaggcaagaagaagagtcagaagaagaccatatacgaggcttttgag
ccctcagaaatcgagagaggattcttcacagatcaggataatgagattcgagtgacggac
atgcctgagcgattccagcttcggcaggtcccagtaaaaccgacagaggaaggagaaatt
gaggaggagtcagaatggatatataaacaagccttctctacaccccccatctcacagcag
aatttactggaacaggagtcggggacatataaccggcgcggtccgagcatgatcaacaag
atcaagaaagccattgacttcatgaggaaccaacacttagaggtcccattcattgccttc
tacagaaaagagtacgtggagtctgacctgaacatcaacgacctgtggaaggtctggcag
tgggatgaaaagtggactcagcttagaaccagaaaacagaacttgatcaagctatttgag
aagatgcagaactatcagtttgacacaaactctgacccagacaaagtgctggagaccaac
gtacgaccgctaacggacgaagatctggacagagtaagaaatgtgcagactatggaggaa
ctgaaggacgtgtatcagcatttcttgctgtactatggccttgacattcccaagatgaag
atgtctcagacgaagaagaagtcggagagcgagaaggaggatggggaggcagaccctgag
ccggagattgagccgaccgacaccatcaaacacgccacccgcaaaaccggctacaacatc
tgtcaggagaaaaaaatagatgacatagctgagaagtttggtctgactccggagcagttt
ggagagaacttgcgggacaactaccagcgtcacgatgtggagcagtatccaatagaacca
ctggagcttgccaaagagaagatctgtggccaatttcctactgaggaggaagtgttgcta
ggagctcgtcacatggtagccatgcagatatcccatgatcccacagtgcgtcagattgta
aggcaggcgtattacgaacgagccaagatcacagtcaggcccacaaagaaagggattaag
gagatagatgaatctcatgcctgctacagcatgaagtatctgaaaaacaaaccagtacgg
gaacttaaggacgaacagtacctcaagctggtcatggcagaagatgatcgactgatcacg
atgactttccacattgatggggaatcagaaacagtacagacgtactttgaggaaatcaga
cagctgtattacagggacgagttcagccatttggtccagcagtggaacttacagagaact
caggccctggagagggcgctcactaagttactgtacccccagatggagaaagaactgagg
gccaaacttctgtcagaggccaaggatggcatcgtcaaggcgtgctgcaggaagctgtat
aactggctgaaggtggcgccgtaccaggccgaccagcagctggaggacaataactatgag
gacgaggggctgagggtgctgggagtgggctactccacggaccgcgacacagccgccttc
ggggtgctgattgaccccgagggtcaggtcaccgacttcctccggctagagtacctgtgt
atgaggaaaaatgccttcagggaggtggaccgcaagggaagggaaaatgacctctccaag
ctgaaagagttcatctcaaccaagaagcctcatgtggtggcagtaactgcagaatccaag
gacgccttgcgaattgtggaagatatccagcggctcatccaggaactgacggaagaggcc
gagatgcctgccattaacgtggagttggtggataacgaggtcgccatggtgtacgaaaac
tccaacaagggacagagtgacttccgtgaataccctgtggttctccgtcacgcgatttcc
gtggctcgacgtctacaggacccgcttatcgagttcgctcagctgtgtaacaccgacgaa
gacatactctgtctgaagtaccaccctctacaggatcaaattcctaaggacgtgctgatt
aatgccctaaccctggagtttgtgaaccgtgtcaatgaggtgggtgtggacattaaccga
gctctggcccatccccacaccgcccccctggtacagttcgtgtgtggcctggggcccaga
aagggagcccatctgctgaaaatcctcaaacagaacaacattcgtctggagaaccggacc
cagctggttactctgtgtcacatgggacccaaggtgttcatcaactgtgccggcttcatc
aagatcgacacattcagtctcatggacagcacggactgctatgtagaagtgctggatgga
tctcgagttcaccccgagacttacgagtgggctcgtaagatggcagtcgacgccctggaa
tacgatgacacggcagaggacgctaatcctgctggtgctctggaggagattctggagagt
ccggacagactgcgggacctggatctggacgcgttcgcagaggagttggaaagacagggt
tatggagataaacacatcacgctctacgacatccgagcggagctgaatcatcgctacaaa
gacctccgcaccccctacagatctccgctcaacgaggaacgcttcaacatgatcaccaag
gaaacgccagaaaccttctatgttggtaaactagtacttggtcgagtcattggtattgcc
catcggcgtccacgcggagaacaactggatcaggctaatccagtgcggaatgacgagacg
ggactgtggcagtgcccgttctgtaacagaagcgacttcccagaactcagtgaagtgtgg
agccattttgatgcgggaagttgtcccggctcagcggtgggagtaaagattatactagac
aacggagtgagtggattcctacacaccaaaaacatcagcgacaaacatatcaagagcccg
gaggagagggtcaagactggaatgacgatacactgtcgcatcaccaaaatcgacatcgat
cggttccaggttgacctcacaagcaaatcctctgacctgatggatgcagacaaccattgg
aggccaccaaaagatctgtattacgaccaggaacaggaagacaaggacaaagagaaagag
gaggagaaggtcaaacacaaggccagacagacctatgtgaagcgtgtcattgctcatcct
tcttttcacaatgtggggtatcgtgaatgtgaaaaactcctggaaaacatggatcaaggg
gaagcaatcatcaggcccagcagcaagggagcggaccacctaacggtgacctggaaggtt
ggggacggaatcatgcagcacatagacgtccgagaggagggaaaggagaatgccttcagt
ctgggatcctccctcttcatagggaccgaggaatttgaggacttggatgaaatcatcgct
cgtcacattcagccaatggcagcatttgctcgggacgtgatgaactttaagtatttcaaa
gagtcagacggaggaaagcgggaaattctggagaagttcctactggaagagaagaagaag
ggaccatccagaatcccgtattacctgacgctgacaaagcagtaccctgggaagatcctg
ttgtcctacatgcctcgtataaagtcgcgccacgaatacatcaccatcactcctgacgga
ctacgctatcggcagcagaacttccactccctgaactcactcatgcgctggttcaaggag
cacttcagggaccccattccaggtaccccagccagcgccaggacacctgtacctggctcc
aattttgccacgcccagcattaaccttcaaggtgtggatgcagcaacaatccaaagagct
gctgctgggttgccgagcaacatctacaacaccttagcccaggttgctagtgcaacacct
cgagtgtcacggatgaccccaggggtcactcctggagccaccccacaagttgctggtggc
tttagcaactttaatgtgccaattggaacacccatgatgacaccaatgatgaccccatca
catcccatgacaacgccggcgaaccagcctgcccagaccccctcctaccgccccaccccc
agggctgctaccaccccagcatggcccggagccacaccaaaggccacaccaagagtgggc
tccacaaccccccagcatcaaggtcagacccccagggcaggacccagcactgcagggatg
gactgggccaaggctgcccagatgtgggccaagaggtcgggctccacaaagcccaccacc
cccaggcacggacagagcccccggggcgtgagaccctcaccccggcccagccccaggcac
gaggggtacgggggaggggactctaccccactgtttgacgaacgatga
DBGET
integrated database retrieval system
