Crassostrea virginica (eastern oyster): 111132915
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Entry
111132915 CDS
T09197
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03022
Basal transcription factors
cvn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111132915
09124 Replication and repair
03420 Nucleotide excision repair
111132915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvn03021
]
111132915
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111132915
Transcription machinery [BR:
cvn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
111132915
DNA repair and recombination proteins [BR:
cvn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
111132915
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
Zn_ribbon_GTF2H2
Motif
Other DBs
NCBI-GeneID:
111132915
NCBI-ProteinID:
XP_022336559
UniProt:
A0A8B8EA61
LinkDB
All DBs
Position
5:3485026..3491928
Genome browser
AA seq
399 aa
AA seq
DB search
MAEEEEKGYRWETEYERTWEAIQEDEKGSLQASVEDIISKAKKRKLLEKIKNVRLGMMRH
LFLIIDMSEAMGDQDLKPTRLLSTLKLLEYFVEEYFDQNPISQLGVITTKNKRAEKVSEL
GGNPRRHITTLQSLTDQICHGEPSLQNSLELAYQTLRHMPGHASREVLIVMGSLTTCDPD
NIISTISMLREANVRCSVIGLAAEVCVCKKLCKETHGSYHVILDESHFKDLLTKHVTPPP
ATANTESSLIRMGFPHHQLSADKETRPSMCMCHLDSKNGQGFSSVGYFCPQCKSKYCELP
IECKACGLTLVSAPHLARSYHHLFPLDQFREIPVAQTGSDVSCFSCQSNIQELNVYICDH
CERFFCLDCDLFIHETLHSCPGCASSRQTQQSAQMAGFS
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggccgaggaagaagaaaaaggatacagatgggaaacagaatatgagcgtacctgggag
gctattcaggaggatgagaaagggtcactacaagccagtgtagaggatatcatcagtaag
gccaagaaaagaaaactcctggagaaaatcaagaatgtccgactcggaatgatgaggcat
ttgtttcttatcattgatatgtcagaggctatgggtgatcaagatttgaaacctacacgg
ctgctgtcaacactaaaactattggagtactttgttgaggaatattttgatcaaaacccg
atcagtcagcttggtgtgatcaccactaagaacaagagggcagagaaagtctcagaactg
ggaggtaatcctagaaggcatattacaactttacagagtctcactgatcaaatttgccat
ggtgaaccatctttacagaactcattagaacttgcttatcaaactctcagacacatgcca
ggacatgctagtcgagaagttctgattgtgatgggcagtttaaccacgtgtgaccctgac
aacatcatcagcaccatctctatgttgagagaggccaatgtaaggtgttcagtcattggt
ctagcagcagaggtctgtgtgtgtaaaaagctgtgcaaagaaacacatggtagttatcat
gtcattttggatgaaagccacttcaaagatctgctcaccaagcacgtgaccccaccccca
gccacagctaacacagaatcttctctcattagaatgggttttccccatcatcagttgagt
gcagacaaagaaacaagaccttcaatgtgcatgtgccacctggacagtaagaatggacaa
ggcttcagcagtgtaggctacttttgcccacagtgtaaaagtaaatactgtgaactgccc
atcgagtgcaaggcttgtggcctcacgttggtgtccgcccctcatctggctcgttcgtat
catcatctattcccactcgatcagtttcgtgaaatcccagtagctcaaacaggatctgat
gtgtcatgtttttcttgtcaatcaaatattcaggaactcaatgtgtatatatgtgaccac
tgtgagcggtttttctgtttggactgtgatctatttatacacgagacattacattcctgt
ccaggatgtgccagctcacgtcagactcaacagtccgcccaaatggcaggcttttcttga
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