Crassostrea virginica (eastern oyster): 111133163
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Entry
111133163 CDS
T09197
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111133163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cvn03009
]
111133163
Ribosome biogenesis [BR:
cvn03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
111133163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WDR55
WD40
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_EML
ANAPC4_WD40
Beta-prop_HPS5
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_IP5PC_F
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_2nd
Beta-prop_SCAP
CFAP43_N
Beta-prop_NWD2_C
Beta-prop_ELP1_2nd
Beta-prop_RSE1_2nd
Beta-prop_DCAF4
PilZNR
Motif
Other DBs
NCBI-GeneID:
111133163
NCBI-ProteinID:
XP_022336993
UniProt:
A0A8B8EBP0
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All DBs
Position
5:27173694..27182998
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AA seq
672 aa
AA seq
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MGEFRVHRVRFFEYQPKAIQCIVYGKEINRVALSRSDGSIELFDLKNDWYQDKVIPGSES
KSIETLCWQGERLYSGGLDGDVVEYDLKKLEPKASASSNAGPVWCLTTDSHGKFLAAGTE
DGCVVLFDTDYHSLQYYRSFDKQEGRILSIAWNTSLEVILTGGVDNMRLWSVKSGHAVQR
MTLGRLDKHKETIVWCVAILSDMTLVSGDSRGRTIFWNGKQGTQIKSFQMHQADVLCLAV
HESEKQVFSSGVDPKVVQFQYTTTSRESDWNMWVRTKIWYQHTHDVRTLAVTPTEVISGG
VDTNLLANRLGNEKNKRKMRSIPMHQLVGVAKERNALLLQYPDYLELWRLGNTRKTSDKD
GEVLPEEIPPQKLIQLKTKDGQHITCSAVSPQANWMSYSDIDGLKLYRINMTEAESIRPS
INIKKVKKHLPAFSAHRLVFTPDENFLIVATSCQQIVVISLEEDSVSVYHTWENYSEDSI
HQLSVSPDSRLVAVADLSYKVTVLELKSKEVVCQLPSYKSTVTAMTFTPDNQNLITAYAD
QKIYEFDVQKKEYSDWCRKVCNNFPNVWMKRHQKIFCICTSPNYPDKIFFSDLDKFFILD
KTQPFPEKYTRPYTLVARPNSSKMTAFHVCTRFRYLMHMDFVHDDWVVMVERTKLAMMES
LPMAMQQKKFGT
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaatttcgagttcatcgagttagattttttgaatatcaaccaaaagccattcag
tgcatcgtttatggaaaggaaataaatagagttgccttatccaggtctgatgggagtatt
gaattatttgatttaaagaatgattggtatcaagataaggttatacctgggagtgagtcc
aaatccatagagaccttgtgctggcagggagagcgtttgtattcaggtggtttagatgga
gatgtggtagaatatgatctaaagaagctagaacccaaggcctcagcttcctccaatgct
ggtcctgtttggtgtttaactactgactcacatgggaaatttttggctgctggtacagag
gatggatgtgtggtcttgtttgacacagattaccactctttgcagtattacagatcattt
gacaaacaagagggtcgaatcttgtctattgcctggaacaccagtttggaggtgattctg
acgggcggagtggacaacatgaggctatggagtgtgaaatcgggtcatgctgtacagagg
atgaccctgggaaggctcgacaaacacaaggagaccattgtgtggtgtgtggccatcctc
agtgatatgaccctggtcagtggtgactcaagagggagaacaattttctggaacggaaaa
caagggacacaaatcaagagctttcaaatgcaccaagctgatgtgttatgtttagctgtt
catgagtctgagaaacaagtgttttcctcgggagtggatccaaaggtggtgcagtttcag
tacaccaccacgagccgggagagcgattggaacatgtgggtcaggaccaagatctggtac
caacacacccatgatgtcaggacactggctgtcacgcccactgaagtcatttctggcggt
gtggacacaaatttgctggccaatcgacttggaaatgagaaaaataaaaggaaaatgaga
tccatacccatgcatcaattggtgggtgtggctaaggagagaaatgccctcctgttgcag
taccctgactaccttgagctctggagactaggaaatactcgcaaaacttcagataaagat
ggtgaggtacttccagaggagattccaccccagaaactgatccaactgaaaaccaaggac
ggacagcacattacatgtagtgcagttagtccacaggcaaactggatgtcatactcggac
atagatggactcaaattgtacagaataaacatgacagaagcagaatccataagaccatca
atcaacataaaaaaagtgaagaaacatctccctgccttctccgctcatcgactggtgttt
acacccgatgaaaactttttgatagtggctacctcatgtcaacaaatcgtagtgatctcc
cttgaggaggactcggtgtctgtgtatcacacatgggaaaattactcagaggattctata
caccagctgagtgtcagtcctgatagcagactagtggctgtggcagatctctcctacaaa
gtcactgtgctggaactaaagtctaaagaggttgtctgtcagttgcctagttataagtca
actgtaacagcaatgaccttcaccccagacaaccagaatcttatcacagcttatgcagat
caaaagatttacgagtttgacgttcagaagaaggaatatagtgactggtgtcgaaaagtg
tgtaacaatttcccaaatgtctggatgaaacgccatcagaaaatattttgcatctgtacc
tcgcccaattatcctgataagattttcttcagtgatttggacaaattctttattttagat
aaaacacagccttttccagagaaatatactagaccatacactttagtagccaggccaaac
tcatccaaaatgaccgcttttcatgtgtgtacaaggtttagatatttaatgcacatggac
tttgtgcatgacgactgggttgtaatggtggaaagaactaaactagctatgatggaatca
cttcccatggcaatgcagcaaaagaaattcggaacctga
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