Crassostrea virginica (eastern oyster): 111133262
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Entry
111133262 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase AMFR-like
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn04137
Mitophagy - animal
cvn04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
111133262
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
111133262
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cvn04121
]
111133262
Enzymes [BR:
cvn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
111133262
Ubiquitin system [BR:
cvn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
111133262
Multi subunit type E3
ERAD complex
111133262
LMBR1L-GP78-UBAC2 complex
111133262
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
CUE
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
G2BR
zf-RING_UBOX
zf-rbx1
zf-RING_11
zf-RING_5
zf-ANAPC11
zf-RING_16
Prok-RING_4
zf-C3HC4_4
zf-RING_Vps41
RING_XB3-XBAT31
zf_RING_Vps8
zf-C3H2C3
Motif
Other DBs
NCBI-GeneID:
111133262
NCBI-ProteinID:
XP_022337179
UniProt:
A0A8B8EBY6
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All DBs
Position
5:35003647..35026345
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AA seq
659 aa
AA seq
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MPVILLERIPLPSLQTYTSVSVLILSVALYYAHHTVTTFDMDSMNTMDFGDEVTVEPMPD
DDVLTDAHDINATLPYDSVGWNMFHILTTEVWCVWILVNSAYCCLILLGKAIQKLVFGEL
RVSEEQHLKDKFWNFLFYKFIFIFGVMNVQTLEEVVSWVAWFTILGFFTLLTQLAKDRFE
YLSFSPIAARGVHLKLLSLLFVILLCSFALLFLSGYVGLHAGPTIFAFLAAECLLLGIRA
LYVVVRYVIHLWDMTISSVWENKSIYIYYTELGFELAALAVDFTHHLHMLLWGNIFLSMA
SLVICMQLRYLFYEFKRRINRHKNYRRVVQNMEARFPMATKDELQVHNDNCAVCWESMES
ARKLPCGHLFHNSCLTSWLEQDTSCPTCRTSLSEGQQVDPNSNVPDERGAAPPPQAQQQP
PQNHFTNHFFHFDGSRYVSWFPSFSVEVTHTQLLPXGRQRAIQTSQLDSMARQVQSVFPH
IPTNVITEDLRNTRSVDFTIENILEGRVQVPPPSLTTMAALTDSEDGTDDNDAPLSSSQS
PPRALQLARPPSEGVERGPTSDGAIGVSSIMDDNVPYLMETQPREEIQFKTGGRFSKSTS
ERESMLQSRKEQMLQNARKKYLNRQVNSPEEESVTTDSSAVDQSDLRERQGRAFPEMPR
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgatcttactggaaagaatcccgcttccaagcttacagacttacacatctgta
tccgtcctaatattgtcggttgcgttgtactatgctcaccacactgttactacatttgac
atggactctatgaacacgatggattttggcgatgaggttaccgttgaacccatgccagac
gatgatgtcctaacagatgcccacgatatcaatgcaactcttccctatgacagtgttggg
tggaatatgttccatatactaaccacagaagtctggtgtgtctggattttggtcaactct
gcttactgctgcttaatactccttggaaaagccatacagaaacttgtgtttggggagctt
agggtctcagaggaacagcacttgaaggacaagttttggaacttcctgttctacaagttt
atttttatcttcggggtgatgaacgtacaaaccctggaggaggttgtgtcatgggtggcc
tggttcaccatcctcggcttcttcacactcctcactcaactggctaaggacaggttcgaa
tatttgtccttctcccctattgctgcccgaggagtccatcttaagctgctcagcctctta
tttgtcattctgctgtgtagttttgccttactgttcctcagcggatatgttggccttcat
gcaggccccactatttttgccttcctcgctgcagagtgccttctcttgggcatcagggcc
ctatatgttgttgtaaggtatgtcatacatttgtgggacatgaccatctcaagtgtctgg
gagaacaaatctatttacatttactacaccgagctgggctttgaactagctgctttagct
gtggactttactcaccacctccacatgttgctgtggggaaatatatttctgagtatggca
agccttgttatctgtatgcagttgagatacttattttatgagttcaagaggaggatcaat
cgtcataagaactatcgaagggttgtccaaaatatggaagcaagatttccaatggcaact
aaggatgaacttcaagtacacaatgacaactgtgctgtttgttgggagagcatggaatcg
gccaggaaacttccctgcggacatttgtttcacaattcatgtttgacatcatggcttgaa
caagacacttcgtgtccaacatgtcgcacatcactgagtgagggacaacaagtggacccc
aacagtaatgtccctgatgagcggggcgccgcacctccaccacaagcccagcagcagcca
ccacagaaccactttacaaaccatttcttccattttgatgggtctcgctatgtcagctgg
ttccccagtttttcggtggaggtgacccacacccagctgttacccnggggcagacagagg
gctatacagacctctcagttggacagcatggctcgccaagtccagtctgtgttcccacat
atcccaacaaatgtcatcactgaagacttgagaaacacaagatctgtggacttcaccata
gaaaacatacttgaaggcagagttcaagtacctccacctagtctaactacaatggctgct
ctaacagactcggaggatggcactgatgacaatgatgccccacttagttcctcccagtct
cctcccagagccctacagctggccagaccccccagtgagggagtagagaggggccccact
agtgatggggcaataggggtcagcagcataatggatgacaatgtcccatacctaatggaa
actcaaccaagggaagaaattcaatttaaaactggtggacggttttcaaagtcaacctca
gagcgagaatccatgttacagagtagaaaagagcaaatgttacaaaatgccagaaagaaa
tatttaaaccgacaagtgaattcgcctgaagaagaaagtgtgacgactgatagcagtgca
gtagaccaatcagatttacgagagagacaagggagggcttttccagagatgccgaggtga
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