Crassostrea virginica (eastern oyster): 111133500
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Entry
111133500 CDS
T09197
Name
(RefSeq) DNA topoisomerase 2-binding protein 1-like isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
111133500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cvn03032
]
111133500
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111133500
DNA replication proteins [BR:
cvn03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
111133500
DNA repair and recombination proteins [BR:
cvn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
111133500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
BRCT_2
RTT107_BRCT_5
TopBP1_BRCT0
LIG3_BRCT
BRCT_TopB1_SLF1
Motif
Other DBs
NCBI-GeneID:
111133500
NCBI-ProteinID:
XP_022337664
UniProt:
A0A8B8EDC5
LinkDB
All DBs
Position
1:complement(32697475..32718987)
Genome browser
AA seq
1660 aa
AA seq
DB search
MGEEEFRVRCVVSDDDNGQDTATEAMKKAQKSLIEEGFSVVWMKDSECLKINKKEKNCVY
LYDPFGGNSFNHIRNLGCRIFGPLCILSSLEYKLDIPKRNVPVYNLAMKDVVLCCTNLVK
QKRNELHEKVEAMGGTVSRDLTNNVTHLIAGEVGSKKYQVAASTGKQIYLPCWVDKVWEA
SQTKHIHGSSSQFLEYACPIFKGLVITVSGLDSEERNQVKKAVEAEGGKYTGEMKVNECT
HLIINKPKGPKYEFAKKWKIHIVKSDWLYDSIEKGYCLEEKQFALSKDAGEKSEVKTSTP
EKESGPRDRMSTLADISCISNVSMIQTTHLNETSSTTQNRKSTDEFETTVESIDLTKSTS
DLFLDGCKIYLSGFRGVALEKLRKVINAGGATRLNTLSDNVTHVVIGERLEKDLEMLRNA
VNRPHVVTPVWMAECFRQGFTVSEDPYRLPEFPPLDPQSPNVKGKKRLTDVKTVDKEGEV
KEEMLGAQEGDDEFSDIMSQYLLQADQGPAPSGERTVIDKAEAPPATTTEEENLTQPPVE
MEEEGPMFHKKTFMFFGFDETHEKEMEKFLLEKGATILKTTSRGIPDYGVVPIDGFPVDR
TVNEIVTNAWVQMCLEQEQVFPVSSNQLFSPIDIKMDASPLTGCVLSVSGFAGTERDCLM
QIADILGAECQEYFVRKANKNLKASTHLVVMEAEGSKYQAAKKWNIPALSKRWIFKCAKT
GERAPEGDYLIENECPQSQDLTSSVQIPFTAGNQSGLPVTGVQPQHANTSPQSSHVSPKT
RGDEAREEMECDASVPVPPGVTDNSPDKAGAHHDESNSNSEVAHIGVNRKSSMGGSKEKT
EVWESGMETNQDDLMMLEVDPQDGSRRGSLRGGERRGSKGGQGSPEIPESQKENRGASKT
PKLTNQRVKELKTAERETTPRNSSHRESLNESSGSLDLEKSFHPRFDLSDVLKNLETPEG
QRGKQRKLGKRKSSLPFGELFESAIHAAAKFTTEYKASETADEVDGVCVSVDEDMERPLK
GVIIYVSKKLSGQQAELNDLVAELGGDYKWQYDATCTHFIFQGKANDTTKEFRIAREQKK
KIVSPLWIRMCKEQNAKVDESLFPHTYNPNLTLSMVKKATPGRGSPVKSTGARSTPQRGT
RRSTRASKQSESSDIEDVPKLTNQTPANGATEAGSLKRGGASSPEPNSKRQRMSSGNEVE
DRETDKEEVEFTEMAGTLDYREELAKQLKEDMAGAKLKKPPGRRRSRKLNSSGQMNMSGE
GSSNDSGMQSRPGSRTNRWSMNDDQKEAPKSSEVPGKEGSLPESSQTVHVMWDDPTGRLE
QERLAHKLQRACSPTQDVNNLQEMMDAQFSDVEEGEEEENPVPQLSEEEQDRRLSSPRAG
PSVAFHKQSKQTVPSPQPVTIEDEEEEAEEDQGSAPPIFILSGMSQEERDDYGVLVESLG
GKMLDGQNFDPSCTHLVIGVPARNEKFLACVASGKWVLHKSYFEACRQEGKFVQEDFYEW
GGEGTASLLEKMNPAIRKLCEAAHRWRLKISSASQSCVGAFSEWRVALCTDRKKEDNFRR
LLEAGGATVLNLKPPFSKSISATHAFVELNKVEMSEDDLLTLVKSGVICVKPDFIAAHLT
NSPTPNPEDYCPSEVRTMLQSLSGKRKLSSNDDSRKRSRR
NT seq
4983 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaggaggagtttcgagtgagatgtgttgtctcagatgatgacaatggacaagac
acagccacagaagccatgaagaaagctcaaaagagcttgatcgaggaaggattcagtgtt
gtgtggatgaaggactcagaatgtctaaaaatcaacaaaaaagagaaaaactgtgtctat
ctctatgatccgtttggaggaaactctttcaaccatatcaggaacttgggatgcaggata
tttggacctttgtgtattttgtcctctttggaatataagcttgacattcccaagagaaat
gttcctgtgtataaccttgccatgaaagatgtggtcctgtgttgcaccaatcttgttaaa
cagaaacgaaatgagctccacgagaaagtagaggccatgggaggtacggttagcagagat
ctgacaaataacgtcacccacctcatagctggggaggtcggcagcaaaaaataccaggtg
gcagcatccactggcaaacagatttacctcccctgttgggtggacaaagtttgggaggct
tctcagactaagcacattcatggcagcagtagccagtttctggagtatgcctgtcccatc
tttaaaggcctcgtcatcaccgtgtctggccttgactcagaggaaaggaaccaggtcaaa
aaggctgtggaagctgaaggtggaaaatatacaggagagatgaaagtaaatgagtgcaca
catctcattatcaacaaaccgaaaggaccaaaatatgagtttgccaaaaagtggaagatc
cacatcgtgaagtcggattggttgtatgactccattgagaagggatactgtctggaggaa
aagcagtttgctctgtccaaggatgcaggggaaaagtcagaggtcaaaacctccacccct
gagaaagagagtggacccagagatcggatgtcaacactggcagatataagctgtatatcg
aatgtatctatgatacagaccacgcatctcaacgaaacctcatccaccacacaaaacaga
aagtccaccgatgaatttgagacgactgtagagtcaatagatctgaccaagtctacctct
gaccttttcttggatggttgtaagatctatctcagtggattcagaggtgttgccttggag
aaattacggaaagtcatcaatgctggaggagctacaaggttgaacaccctcagtgataac
gtgacccatgtggtgatcggggagaggctggagaaagatctggagatgctgaggaatgca
gtgaataggccccatgtggtgacccccgtgtggatggccgagtgcttccgtcagggcttc
accgtcagcgaggatccataccgacttccagagttccctcccctggatccccagtctcca
aatgtcaaagggaagaagagattgacagatgtaaagactgtggacaaagaaggggaagtg
aaggaggagatgttgggggcccaagaaggggatgatgagttctcagacatcatgagtcaa
tatctacttcaggcagatcaagggcctgctccatcaggggaaagaactgtgatagacaag
gcagaggccccaccggcaaccactacagaggaggagaatttgacacagcccccagtagaa
atggaggaagaaggaccaatgtttcacaaaaagacattcatgttttttggatttgatgag
acacatgaaaaagaaatggaaaaattcttgttggaaaaaggagcgacgattttgaagacg
acgagtcgtggcatccctgactatggagtggtgcccatcgacgggtttcctgtggaccgc
acagtcaacgaaatcgtcaccaatgcttgggtgcaaatgtgcctggagcaggaacaggtg
ttcccggtgtccagcaatcagctgttttctcccatcgacatcaagatggatgcctcccct
ctcacaggatgtgttctctccgtcagtggctttgctggtacggagagggactgcctgatg
cagatagctgatatcctcggagccgagtgccaggaatattttgtgaggaaggccaataaa
aacctgaaagccagcactcatctggttgtgatggaagcagagggttccaaataccaggca
gccaaaaaatggaacattccagccctctctaagaggtggatattcaaatgtgccaaaact
ggagagcgcgctccagagggggattacctgatagagaacgagtgcccccagtctcaggat
ctcacctcaagtgttcagatacctttcacagcaggtaaccaatcaggtctacctgtcaca
ggtgttcaacctcagcatgctaatacatcaccacaaagcagccatgtcagtccaaaaaca
agaggagatgaagcgagggaagaaatggagtgtgatgcatcagtacctgtacctccaggt
gtgacggacaattcacctgacaaggcaggtgcccaccatgatgagtccaactctaacagt
gaagtagctcatataggagtgaatagaaagagctcaatgggtggatccaaagagaaaaca
gaggtgtgggaatctgggatggagaccaatcaggatgatctgatgatgctggaggtggat
ccacaggatggtagcaggaggggatcgctgaggggtggagagagaagagggtcaaaagga
ggccagggatccccggagattccagaaagtcagaaagaaaacaggggggcttcaaagacc
ccaaaattgaccaatcagagagtcaaggagttaaagacagcagaaagagagacaactcca
agaaactcttcacacagagagagtctgaatgagtcatcaggatccttggacctagagaaa
tcgttccatccacgatttgacctctcggatgtgttgaagaatctggagactcctgaaggg
cagagagggaaacagaggaaactcgggaagaggaaatccagcttgccttttggagaactg
tttgagtcagccatacatgcggcagcgaagtttaccacagagtacaaagcctctgagacg
gcagatgaagtggatggagtgtgcgtctcggttgatgaggacatggaacggcccctaaaa
ggggtgatcatctatgtgagtaagaagctgagcggtcaacaggcggaactgaatgatttg
gtggcggagctcggtggcgactacaagtggcagtacgacgccacctgtacacactttata
ttccagggaaaagcaaacgacacaacaaaagagtttagaatagccagagaacagaagaag
aaaattgtctctccactgtggatccgcatgtgtaaagagcagaatgccaaggtggatgag
tccctgttccctcatacctacaatcccaacctgacactgtccatggtgaagaaagccacc
ccaggacgagggtctccagtgaaatcgaccggggcccgcagcactccccagagggggaca
aggagatccacgcgagccagtaaacagtccgagagctccgatattgaagatgtgccaaaa
ctgaccaatcaaacaccagccaacggagctacagaggccgggtcactgaaaaggggtgga
gcctcctctccggaacctaacagtaaacgtcagcggatgtcttctgggaatgaagtggaa
gacagagaaactgataaagaggaggtggagtttacagaaatggctggcacactggactac
agggaggaactggccaaacagctgaaagaagacatggcaggcgcaaaattgaagaaaccc
ccaggtcgcagaagaagtaggaaacttaattcgagtggtcagatgaacatgtcaggggag
gggtccagtaatgacagcggtatgcagagtcgtccagggtcaaggacgaatcgctggagc
atgaacgacgatcagaaggaggctccaaagtcctcagaagttccagggaaggaaggctcc
ctcccggagtcctcgcagacggtccacgtgatgtgggacgaccccacggggcgcctggag
caggagaggctggcccacaaactgcagcgagcgtgcagccccacccaggacgtcaacaac
ctccaggaaatgatggacgcccagttctcggacgtggaggagggggaggaggaagaaaac
cctgtcccacaactgtcggaggaggaacaggacaggcgactgtcttctccccgagcaggg
ccatctgttgcattccacaagcaatccaagcagactgtcccctccccccaaccagtgacc
atagaggatgaggaggaggaggcagaggaggatcaaggatctgccccacccatcttcatc
ctctcagggatgtctcaagaggagcgagatgactatggagtcctggtggagagtctaggg
gggaaaatgctggatggacagaactttgatccatcctgtactcacctggttataggtgta
ccggccagaaacgagaaattcctggcttgtgtagcctctgggaaatgggttcttcacaag
tcttactttgaggcgtgtcgacaggagggcaagtttgtacaggaggatttctatgagtgg
ggaggggagggaactgcgagtctcctggagaaaatgaaccccgccatcagaaaactgtgc
gaggctgcccaccgctggaggctgaaaatcagctcagcttctcagtcctgtgtcggtgca
ttcagtgagtggagagtggctctgtgtactgatcgcaagaaggaggacaatttccggcga
ctgttggaagcagggggcgccactgtcctcaatctcaaaccgcccttcagtaaatccata
tcagccactcatgcatttgttgaactgaacaaagtggaaatgtccgaggacgacctttta
accctggtgaagtcaggggtcatctgcgtcaaacccgacttcatcgcagctcacctgaca
aacagtcctacaccgaatcccgaggattactgcccctcagaagtccgcaccatgctgcag
agtttgtctggaaaaaggaaattgtcttccaatgatgatagtcgaaagcgatcaagaaga
tga
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