Crassostrea virginica (eastern oyster): 111133797
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Entry
111133797 CDS
T09197
Name
(RefSeq) DNA damage-binding protein 2-like isoform X1
KO
K10140
DNA damage-binding protein 2
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03420
Nucleotide excision repair
cvn04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
111133797
09124 Replication and repair
03420 Nucleotide excision repair
111133797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cvn04121
]
111133797
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111133797
Ubiquitin system [BR:
cvn04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
111133797
DNA repair and recombination proteins [BR:
cvn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
111133797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_EIPR1
WDR55
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
EIF3I
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_NWD2_C
WD_LRWD1
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
111133797
NCBI-ProteinID:
XP_022338170
UniProt:
A0A8B8EDI9
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All DBs
Position
5:complement(3677459..3682943)
Genome browser
AA seq
519 aa
AA seq
DB search
MPRKRKDDQKSLMNAEEKPKKLKSKDKDVEDCQTYAQKLKKKMDHKALRGKEVEETPIHE
SILVNREDTLLRLKPRVSPYTVQVTRPSYTKSHNLAHQLHGYSMGVPRKTLYESTTKCVI
DMLSEMQISTMTSPFDRRVTAVEWHPTNPGLVAVGSKGGDIFWWDTSDTNRQKFIQGMGA
GGIINAIKFWPHNYSKILTAAVDGTITLNDIEGKNTQVLADTLNAHDFWYCSVDVHPERK
FVAAGDNVGKLQFLSYEGKKTFEFRLHKNKITHCEFSPLEEWMLCTASTDHTVQIWDVRM
IKDRGSSLCIMKHEKPVNSAYFSRTNGCRLLTTDQNNQVRVYLAPEWHLEKTILHPHRFF
QHITPIKATWHPLLDLAVIGRYPDPNFAGYHDNELRTIDVIDVDTEKVVTKLHDPSATGL
VCVNKFNSDGDTLVSGMGVNLLLWRRKEEAAKIQESFMSKLDGKSLDPTSHQGQTRSSRA
GQSKRAGDKLKKTKDTTESKQTKSKLKVKTLEEKHRGKK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgccgaggaaaaggaaagacgaccagaagagcctgatgaacgctgaggaaaaacccaag
aagctcaaatcaaaagacaaggatgtggaagactgtcaaacttatgctcaaaagttaaag
aagaaaatggatcataaggctttaagaggaaaagaagtagaagaaactccaattcacgag
agcattttagttaacagagaagatacactgcttagactaaagcccagagtgtctccatat
acagtccaagtaaccagaccatcttacaccaagagccacaatctagcacatcagctgcat
ggatattcaatgggagtgcccaggaaaaccctttatgaaagtacaacaaaatgtgttatt
gacatgttatcagagatgcagatatccaccatgaccagcccctttgaccgccgggtgacg
gcggtcgagtggcaccccaccaatcccggacttgtggccgtaggatctaaagggggagac
atcttctggtgggacactagtgataccaacaggcaaaaattcattcaagggatgggtgct
ggaggaataataaatgccattaaattttggccccacaattatagcaagattctgactgca
gctgttgatggcacaattaccttgaatgacattgagggcaaaaacacccaggttttagca
gatactctcaatgctcacgacttttggtactgcagtgtggatgtgcatccagagaggaag
tttgtagcagcgggagataatgtagggaaactgcagtttctctcctatgaaggcaaaaag
acatttgaatttcgccttcacaagaataagataacccactgtgaattctccccattggag
gagtggatgctgtgcacagcctccacagatcacaccgtccagatctgggatgtgagaatg
atcaaggatcgcggcagttctctttgcatcatgaaacacgagaaaccggtcaactcagct
tattttagccgcaccaacggttgtcgactgctcacgacagatcagaataatcaagtaaga
gtgtacctggctcctgagtggcatcttgagaaaacaattctccatccccaccgctttttt
caacacataactcccatcaaagcaacttggcaccctttattagacttagctgtcattgga
agataccctgacccaaattttgctggttaccatgacaatgaactgcggaccattgatgtc
attgatgttgacacagaaaaagtagtgaccaagcttcatgacccctcagctacaggtctt
gtctgtgtgaataagttcaattcagatggagacactttagtctcaggaatgggtgttaac
ctgttgttgtggaggagaaaggaagaagctgccaaaattcaggagtcattcatgtccaaa
ctagatggaaagagtttggatccaacctcacaccaaggtcagacaaggtcaagtagggct
ggccagtccaagagagcaggcgacaaactcaagaaaacaaaagatacaacagaaagcaag
caaacaaaatcaaaactgaaagtaaaaacattggaggaaaagcaccgaggaaaaaagtga
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