Crassostrea virginica (eastern oyster): 111134654
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Entry
111134654 CDS
T09197
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03030
DNA replication
cvn03420
Nucleotide excision repair
cvn03430
Mismatch repair
cvn03440
Homologous recombination
cvn03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111134654
03420 Nucleotide excision repair
111134654
03430 Mismatch repair
111134654
03440 Homologous recombination
111134654
03460 Fanconi anemia pathway
111134654
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cvn03000
]
111134654
03032 DNA replication proteins [BR:
cvn03032
]
111134654
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111134654
Transcription factors [BR:
cvn03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
111134654
DNA replication proteins [BR:
cvn03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
111134654
DNA repair and recombination proteins [BR:
cvn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
111134654
MMR (mismatch excision repair)
111134654
DSBR (double strand breaks repair)
HR (homologous recombination)
111134654
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CompInhib_SCIN
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
111134654
NCBI-ProteinID:
XP_022339609
UniProt:
A0A8B8EIR3
LinkDB
All DBs
Position
5:complement(33963735..33970764)
Genome browser
AA seq
623 aa
AA seq
DB search
MTNHNLSSGALESIINGVNFDRPILQVISSKKITAQGSSADRYRLLLSDGEVSYSHAMLA
TQLNSLMESGELDNLAVISVDKYLCNTIQGDRRVMILLDLHVIQKGTEVGQRIGNPQQYK
ASAVQGTNSEHNSAQCPPQMPKQEGGGQSFISTVSDKQVNNNIKKENMNGSSKGNYSIKA
SNSGGTPGGASRVHKIDSLTPYQNRWKIRARVTQKSGIRTWSNSRGEGKLFSVTLTDDSA
EIRATGFNDAVDKFYDLLEVNKVYFFSKATLKTANKQYTTVQNDYEMTFNADTMIEPSDD
DSSLPTMNFNFVKINELDSKAPNTLVDVIGVVKNCGEISTIIGKQSQKEITKRDLQIVDQ
SGMSVNVTLWGVDAQQFDGSGNPVIAVKGAKVSDYGGRSLSAMATSQIIHNPDLREGHML
KGWFEHDGHNMDFQGYRNDGPGGGGGGTTNWKCFAEIKSENVGADKPEYFTTKATVLFLR
KENCMYQACPTEACNKKVVDQGNGMYRCEKCAREFPNYKWRMILSANLGDYSDNQWVTCF
QESAEAMLGIKADELGSLKDSNEAAFDQVFQDACFKSYVFKLRAKVETYNDESRLKTVTM
NASTIDFKEQSQRLIEEIKKLQM
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaccacaatctcagttcaggggctctcgagtctatcataaatggagtcaacttt
gacagaccaattcttcaagtaataagctcaaagaaaataacagcacaaggttccagtgct
gacagatacaggttgctgctatctgatggagaagtcagttattcacatgccatgttggct
acacagttgaatagtttaatggagtctggagagctagacaacctggcagtgataagtgtt
gacaagtatctttgtaacaccattcagggagacaggagagtaatgatcctgttggacttg
catgtgattcaaaagggtacagaagttggacagagaataggaaacccccaacagtacaag
gcttcagctgtccagggcacaaactccgaacacaattctgcccagtgtccaccccaaatg
ccaaaacaagaaggagggggtcagagcttcataagcactgtctctgataagcaagtcaac
aataacataaaaaaagaaaacatgaatggatcatcaaagggcaactactccataaaggca
agcaattctggaggtacaccaggtggagcatcaagagtgcacaaaatagacagtctcaca
ccataccaaaacaggtggaaaatcagggcccgtgtcacacaaaagagtgggatccgcacc
tggtccaactctcgtggagagggcaagctattcagcgttactttgactgatgactccgca
gaaattcgtgccacaggattcaatgatgctgttgataaattttatgatttactggaggtc
aacaaggtgtatttctttagtaaagccactctgaaaactgccaacaagcagtatacaaca
gttcaaaatgactatgagatgactttcaatgctgacactatgattgaaccaagtgatgac
gacagcagtctaccaacaatgaatttcaactttgttaaaataaatgagctggatagcaaa
gccccaaacacccttgttgatgtaattggtgttgtgaagaattgtggggagatatctacc
attattggtaaacagagtcagaaagagatcacgaagcgagacctacagatagtggaccag
tcaggaatgtcggttaacgtgaccctttggggggttgatgctcaacaatttgatggatca
ggaaatcctgtcattgctgtgaaaggggccaaggtttcggattatggaggacggtcttta
tctgcaatggccaccagccaaatcattcacaatcctgacttgcgagagggacacatgttg
aagggctggtttgaacatgatggtcacaacatggactttcagggctacagaaatgatgga
ccaggaggtggtggaggaggtacaacgaattggaagtgttttgcagagatcaagtctgaa
aatgttggagcagataagccagaatacttcacaaccaaagctacagttctgtttctacgg
aaggaaaattgcatgtaccaggcatgtcccacggaagcttgtaacaagaaggttgtggac
cagggaaatggaatgtacaggtgtgagaagtgtgccagggaatttcccaattacaaatgg
aggatgatcttatctgcgaatttgggagactactcagataaccagtgggtgacctgtttc
caggagtctgccgaagccatgctgggcattaaggctgatgagttggggtctctcaaagac
tcgaatgaagcagcatttgatcaagttttccaagatgcctgttttaaatcctatgttttc
aagctgcgggctaaagtggaaacttacaatgatgaaagtagattgaaaactgtcacaatg
aatgcaagtaccatagactttaaagagcaatcccaaaggttgatagaggagatcaagaaa
ttacagatgtga
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