KEGG   Crassostrea virginica (eastern oyster): 111134659
Entry
111134659         CDS       T09197                                 
Name
(RefSeq) poly(U)-binding-splicing factor PUF60-like isoform X1
  KO
K12838  poly(U)-binding-splicing factor PUF60
Organism
cvn  Crassostrea virginica (eastern oyster)
Pathway
cvn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cvn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111134659
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cvn03041]
    111134659
Spliceosome [BR:cvn03041]
 Complex A
  U2 snRNP components
   U2 related factors
    111134659
 Complex B
    111134659
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_DEAH11
Other DBs
NCBI-GeneID: 111134659
NCBI-ProteinID: XP_022339616
UniProt: A0A8B8EJ03
LinkDB
Position
5:70520324..70529083
AA seq 596 aa
MAVLPTTIPFSQQMNGDVFKDNGPSEITRIKTDEELMIENGVYIPQADQIGSILEGPGAK
RDQKPFTLPKLSSSQHELVQKAKKYAFEQSIKSVLVKQTIAHQQQQMQNFQTTVQRQQAL
ALMCRIYVGSINFEIKEDTIKQAFIPFGPIKSVNLSWDPVTNKHKGFAFIEYEIPEAAQL
ALEQMNSVMIGGRNIKVGRPSNMPQAQPIIEQLAQEAKNHNRIYIASIHHDLSENDIQSV
FEAFGKIVNCKLATETGKPGKHKGYGFIEFDSQQAAQDAVTSMNLFDLGGQYLRVGKAIT
PPDALQPMAGPGTLPTAAAVAAAAVTAKITAMDAQEQIKSLAPPGVAKPQRLGNSPSLSS
SPVPPPGVVAPVPVPPVSVVVPQLGSGGIVTTTTLGMVMPTAIEGVPKMVPPAVVAPAVM
GVAPVPVPVPTTIPVSVPAMIPLPPQDKEKDLKKEEEEKMKKAEEDSSQTLDQQENMAIS
GTNARHMVMQKLMRKTECKVMVLRNMVGPEDLDSELENEVTDECGKYGNVNRVIIYQEKQ
SEEEDAEIIVKIFVEFSAQSEVEKACAALNGRYFAGRIVTAEKYDEDMFNANDLSG
NT seq 1791 nt   +upstreamnt  +downstreamnt
atggccgtccttccaacgacaattcccttttcacaacaaatgaacggagacgtttttaag
gataatggaccgagtgaaataacgagaatcaagacagacgaagagcttatgatagaaaat
ggagtctacataccacaagctgatcagatcggttccatcttggaaggcccgggagctaag
cgggaccagaaacctttcactcttcccaaactctcctcttctcagcatgaacttgttcag
aaggcaaagaagtatgcttttgagcagagcatcaaaagtgttctggtgaaacagacaatt
gcccaccagcaacagcaaatgcagaattttcagacaactgtacagagacaacaggctttg
gccttgatgtgcaggatttatgtaggcagtattaactttgagattaaagaggacacaata
aaacaagcatttattccctttggtcccataaagagtgtcaacctctcgtgggacccagtc
accaataaacacaagggctttgccttcattgaatacgagattcccgaggccgcacagctc
gctctggagcagatgaacagtgtcatgattggtgggagaaacatcaaggttggtcgaccc
agtaacatgccacaagcacagcccatcattgaacagttggcacaggaagctaagaaccac
aacagaatctacattgcctcaatccaccatgacctgtctgaaaatgatatccaaagtgta
tttgaagcttttggaaagattgtcaattgtaaactagccacagaaacagggaagccagga
aaacacaagggttatggcttcattgagtttgactctcaacaagctgcacaagatgccgta
acatcaatgaatttgtttgatcttggagggcagtaccttcgagttggaaaggccatcacg
ccccctgacgccctacagcccatggcagggcctggaaccctacccacagcagcagcggtg
gctgccgcagcagtcacagccaaaataacggctatggacgctcaggagcaaatcaaaagc
ctggcaccaccaggagttgccaaacctcagaggttagggaatagtccatccttatccagc
tccccagtcccccctcccggggttgtggcccctgtacctgtgcccccagtgtcagtggtt
gtgccacagctcggatcaggaggtatcgtgacaaccactacattgggaatggtgatgcca
acagctattgaaggtgttcccaaaatggtgcctccagcagttgttgccccagcagttatg
ggtgttgcacctgtccctgtgcctgtcccaaccactataccagtatctgtcccagccatg
attcctttgcctcctcaagacaaagagaaagatctgaagaaggaagaggaggagaagatg
aagaaggcagaggaggactcgtcacagaccctggaccagcaggagaacatggccatcagc
ggcaccaacgcccgccacatggtcatgcagaaactcatgaggaaaacagagtgtaaggtg
atggttttgagaaatatggttggaccagaggatctagacagtgaactggagaatgaagtc
acggatgaatgtggaaaatacggaaatgtcaatcgcgtcataatttaccaggagaaacag
agtgaagaggaggatgcagaaattatcgtcaaaatctttgtggagttcagtgcgcagtca
gaggtagaaaaggcatgtgcagcactcaatggcagatactttgctggacgaatagtcacg
gcagaaaaatacgacgaggatatgtttaacgcaaatgatttatcagggtga

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