Crassostrea virginica (eastern oyster): 111134722
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Entry
111134722 CDS
T09197
Name
(RefSeq) collagen alpha-2(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn04382
Cornified envelope formation
cvn04512
ECM-receptor interaction
cvn04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111134722
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
111134722
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
111134722
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cvn04147
]
111134722
00536 Glycosaminoglycan binding proteins [BR:
cvn00536
]
111134722
Exosome [BR:
cvn04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
111134722
Glycosaminoglycan binding proteins [BR:
cvn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111134722
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
111134722
NCBI-ProteinID:
XP_022339743
UniProt:
A0A8B8EJT0
LinkDB
All DBs
Position
5:complement(63871160..63895127)
Genome browser
AA seq
1763 aa
AA seq
DB search
MEPRVVIVFLVVLGLSLDLSLGAACKGCSSTVCLCAGQKGVRGAPGLPGLRGSQGLPGFI
GNEGPPGPPGLTGDDGEAGGIGEKGNRGVAGPQGMTGVPGVPGYEGLEGPVGPQGYPGCN
GTKGLKGLPGVEGLPGRQGPRGEPGFFGTKGDPGDGFYGFGPKGDPGDAGRQGPNGDPGI
PGRPGPPGPYGAEGPRGPAGTPGTKGPKGQMGDQGRNPAKGQKGVKGLPGLRGPKGIFNT
VIGPKPGEIKQGMKGEAGGPGYDGRPGLEGYPGQRGEPGLPGLQGDKGPFGMPGMQGMRG
KRGKDGPPGAFGYKGDKGENGIQGFDGLPGEIGRTGDPGFQGMRGDDGDPGPQGDPDGGG
QGRPGPRGRPGDLGPQGPQGFPGLDGTDGPIGRDGPPGPPGPDGIPGQRGLPGFSYPGDR
GDLGDFGQDGIPGLPGLPGLKGTIGDQGPDGDTVQGYPGEEGRVGRPGFDGLPGMRGDSG
PQGYPGIPGTGLDVTGPIGPVGFPGEEGDPGFPGEDGQDGIPGNRGDRGEDCGVCPGGQP
GSRGDPGDLGLDGLPGQPGQPGFQGQPGEAGVPGFPGLPGPKGQPGPNGIPGEIGRVGPK
GEPGDFEGLEPLKMKGKQGELGPQGAPGMAGLSGQVGQRGPKGFPGLPGERGRVGEPGFE
GLDGLPGIQGEDGLPGMPGDSIPGELGRSGPKGFPGVNGYQGLPGFKGEKGEPSQLNIPP
GKKGEPGIMGIPGEDGREGLPGLFGMKGEPGLGGLPGESGRVGMKGDNGRPGIPGERGLV
GQKGYPGVPGFAGLSGIPGNKGLPGESGVVGLPGLPGDQGIPGLDAPPVELLKGEPGDPG
LPGLEGERGYPGEIGRVGRPGFNGPKGIRGDAGAYGTPGFPGLKGEQGIVGFSGFPGLKG
IRGNDGIPGETGFVGSPGDAGLPGLPGQDGLKGQRGFPGADGLDGSPGREGPAGEPGLSG
LPGYDGLPGMRGETGFPGRAGDLGIPGQPGFPGQKGFRGEPGLPGLPGQFGLPGFKGESG
LAGFPGPDGLRGQPGLPGLQGVPGDEGFPGETGVVGRPGQDGFPGIKGERGNVGNSIPGD
PGRNGFSGSDGFPGLNGLKGEKGGPGPVGTPGVDGERGVTGLPGIPGEQGRTGVPGFKGE
NGENGLPGIDGFPGERGVTGLPGADGFPGLQGERGGFGYPGEQGLVGAPGEPGFDGSPGL
PGSDGQKGFPGDAGRDGLPGFPGMKGADGRFGFDGFKGEAGIPGEEGRAGRPGRKGDQGD
IGFVGRPGSPGEDAFGLIGLPGDPGIPGLSGRPGDKGIVGDNGLPGFPGLKGMRGEAGYG
FEGFKGERGVDGFPGERGRVGVNGIPGEPGLNGIPGLKGQQGLPGFPGEEGQVGDRGFPG
RQGSRGQDGIPGEQGQTGDRGFPGEVGRNGLPGDRGLDGLDGFKGERGDDGLPGLPGDSL
PMPTNILKPQPWQRGDKGSQGRDGDSGLNGLVGERGDDGSRGMTGEPGRNGEIGDPGVKG
PPGDNGLSGIPGERGRQGRPGPKGFPGIPGIEGPVGEGYGIYFAKHSQTTVVPQCPEGTV
KMWDGYSLVHVIGNGRSHGQDLGTSGSCLRRFSTMPIMFCNINNVCNLAWRNDYSYWLST
REPMLPMMNPVEGQALQRYISRCSVCEAVSEVVAVHSQETSIPNCPSGFRSLWTGYSFMM
TSGAGGRGAGQALSSPGSCLEDFRATPFIECHGNGRCNHYATSYSFWMATIRSFEEFRTP
ISETLKAGSQESRISRCRVCTRQ
NT seq
5292 nt
NT seq
+upstream
nt +downstream
nt
atggaaccgagggttgtgattgtattcctagtggttctgggactttccttggatctatct
cttggagcagcctgtaaggggtgcagctctactgtgtgtttatgtgcaggacagaaaggt
gtcaggggagcacctggtttacccggactgcggggttcccaggggttgccgggattcatc
ggtaacgagggcccccctggacccccaggcttaactggggatgatggagaagctggtggg
atcggtgagaaaggcaacaggggtgtcgctggacctcagggaatgaccggggtacctgga
gttcctggttatgagggactggaaggtcccgtgggacctcagggttatccaggatgtaat
ggcacaaagggattgaagggtctccctggagttgaaggattaccagggagacagggacct
cgcggagaaccaggattttttggcaccaagggtgatccaggagatggattttacggattt
ggtcccaagggagatcctggggatgctggcagacaaggaccaaacggtgaccctggtatc
ccagggcgacctggcccccccggaccatacggtgcagaaggccccaggggaccagccgga
acacctggaacgaaaggtcctaagggtcaaatgggtgaccagggacggaatccagccaaa
ggtcaaaagggtgtgaaaggactgcctggtttaagaggacccaaggggatctttaacact
gtaattggacccaagcctggtgaaatcaagcaaggaatgaagggtgaggcgggggggcct
ggttacgacggacgaccgggattggaaggctacccgggtcagcgtggagagccaggcttg
ccgggcctgcaaggagacaagggaccatttggaatgcccgggatgcaggggatgagggga
aaacgaggcaaggatgggccaccgggagcttttggctacaagggagataagggagaaaat
ggcatacaaggattcgatggtttacccggtgaaattggccgaactggagaccctggtttt
cagggaatgaggggtgatgacggagatccaggtccacagggagatcctgatggaggaggt
caaggtcgtccgggaccaagaggtcgtccaggagacctgggccctcaaggtccccaagga
tttccaggactggatggtaccgatggccccataggaagagatggacccccaggacctcca
gggcccgatggaattcctggacaaagaggactgccgggattttcctacccaggagacagg
ggagatttaggtgattttggtcaagatggaattcctggtttgcctgggttacccggattg
aaaggaacaataggagaccaaggaccagatggcgacacagttcagggttaccctggggaa
gaggggcgcgttggccgaccaggctttgatggactgccgggaatgcgtggagattcggga
ccccagggctatcccggtatcccggggactggactggatgtgacaggtcccattggacca
gtgggatttcctggagaagagggagatccaggatttcctggagaagatgggcaggacggt
attcctggaaatagaggtgatagaggagaggactgtggggtgtgccctggggggcagcca
ggatcacggggtgacccaggagatctgggtctggacggacttcccggacagccaggacag
cccggtttccagggacaacctggagaagctggggttcctggattcccaggattaccgggt
cctaaaggtcaacctggtcctaatggcattcctggagaaataggtcgagtaggtcctaag
ggagagcctggagattttgagggtctggaacccctgaagatgaaaggcaagcagggagaa
ctcggtccccagggggcaccaggcatggcagggttatctggacaagtcggtcaacgagga
cccaaaggcttccctggccttccaggagagaggggaagggttggagaaccaggatttgag
gggttggatggcttgcctggaattcagggagaggatggactacccggaatgcctggagat
tccattcccggtgaactgggccgatctgggcctaagggattccctggagtgaatggatat
caaggactacctggatttaagggtgagaaaggagaaccgtctcagctcaacattccaccg
ggaaagaagggggagcctgggatcatgggaattccaggggaagatggaagagagggactt
cctggattgtttggaatgaagggagaacctgggctaggaggacttcctggagaatcgggt
cgtgttggcatgaagggagacaatggccgaccagggattcccggggagaggggtctggtc
ggtcagaaaggttaccctggggtgcctgggtttgctggactgtctggtatcccaggaaac
aaaggattacctggggaatctggtgtagtgggactaccaggcttacctggggatcaagga
attcctggactagatgcacccccggtggagcttctgaagggagagcctggagacccaggg
ttgccaggactggagggggagaggggatacccaggggaaataggccgtgtgggcaggccg
ggctttaatggacccaagggaatcagaggtgatgctggagcctacggaacgccaggattc
cctggattgaagggagaacaaggaattgtgggattttctggtttccctggcttgaagggt
atccgcggaaatgatggaatcccaggagaaactggttttgtgggtagtccaggagatgct
gggttgccagggttaccaggtcaggatgggttaaaaggtcagcgaggttttcctggagca
gatggattagatggatctcccggtcgagaggggccagctggggagccaggcctatcgggc
ttgcctggatacgatggattgccgggtatgaggggtgaaactgggtttccaggacgagcg
ggagatttaggaatacctggtcagccaggatttccaggccagaaaggtttccgtggagag
cccggactccctgggctcccgggccagttcggtctgccaggatttaagggagaaagtggg
ttagcaggattccccggtccggatggtctgcggggccagcctgggttacctggactccag
ggggtgccaggagatgagggattcccaggagagactggagtggtgggaagacctggacaa
gatggtttcccaggaattaaaggagaaagaggaaatgtcggaaattctatcccaggagac
ccaggaaggaacggattttcaggatcagacggattcccgggattaaacggattaaaggga
gaaaagggtgggcccggtccggtagggactccaggtgttgatggagaacgaggggtcaca
ggtttaccgggaatacctggtgaacaggggagaacaggagtcccaggctttaaaggagaa
aatggagaaaacggtctccctggaattgatggctttccaggagaaaggggagtaacagga
ttaccaggagccgatggtttccctggacttcaaggggagcgtggtgggtttggatacccc
ggagagcagggattagtgggtgccccgggagagcccggctttgatggttcccccgggctg
ccaggttccgacggacagaagggtttccctggagatgccggacgtgatgggttgccaggt
ttcccaggaatgaagggagcagatggtcgctttggatttgacggatttaagggagaggct
ggaattcctggggaggagggtcgagctggccggccgggcagaaagggagatcaaggagac
attggctttgtgggtcgtcctggatctcctggtgaagatgccttcggtttgattggactg
ccaggtgaccctggaattccgggactatcaggtcgtcctggtgacaagggaattgtggga
gacaatggacttccgggatttccaggtctgaagggaatgaggggagaagctggctatggt
ttcgagggattcaaaggagagaggggagtggatggattccctggagaaagaggtcgagtt
ggagtaaatggtatccctggtgaacctggtttgaacggaatcccggggctcaaggggcag
cagggcttgcctggatttcccggagaggagggtcaggtgggagacaggggcttcccagga
agacagggcagcagaggacaggatggaatccccggggagcagggtcagactggagacagg
ggattccctggagaggtcgggcggaatggattgcctggcgaccgcggattggatggactt
gacggattcaagggagagcggggagatgatggattgccgggacttcccggagacagtctg
ccgatgccaactaacatcctcaagccccagccctggcagaggggagataaggggagtcag
ggcagggatggagactccggattaaatggactggtcggggagagaggtgatgatggctcc
cgaggaatgactggtgagccgggacgtaacggagaaattggtgatccaggagttaaaggg
cccccaggagataatggactctccggtattcccggggagcgaggacgacagggaaggcca
ggacccaagggattccctggaattcccggcatagaaggccccgtgggagagggctatgga
atttactttgccaaacacagccagacaaccgttgtacctcagtgccccgagggaacagta
aagatgtgggatggttactctttggttcacgtgatcggaaatggccgaagccacggacaa
gatctgggtacttccggcagttgcctgcgccgcttcagcaccatgcccatcatgttctgc
aacatcaacaacgtgtgcaacctggcgtggaggaatgactacagttactggctgtccacg
cgggagcccatgctgcccatgatgaatcccgtggaggggcaagctctccagagatacatc
agtcgctgctcagtctgtgaggcagtctctgaggtggtggctgtccacagtcaagagacc
tccattcccaactgtcccagtggattccgaagcttgtggacaggatatagttttatgatg
acctccggggctgggggacggggagctggccaggcgctatcctcacccggatcctgtctg
gaggacttccgggccacacccttcattgaatgccacggaaacgggcgatgcaaccactac
gccacatcctacagtttctggatggccacgatccgctcgttcgaggagttccgaacaccc
atctctgaaacattgaaggcgggatcgcaggaatcccgcatcagtcgctgtcgggtgtgt
acgcgtcagtaa
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integrated database retrieval system