Crassostrea virginica (eastern oyster): 111134850
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Entry
111134850 CDS
T09197
Name
(RefSeq) ATP-dependent RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111134850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111134850
03012 Translation factors [BR:
cvn03012
]
111134850
Enzymes [BR:
cvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111134850
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111134850
Translation factors [BR:
cvn03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111134850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
nSTAND3
AAA_19
AAA_22
AAA_23
AAA_14
ATPase
ResIII
Cas3-like_C_2
TsaE
PhoH
Motif
Other DBs
NCBI-GeneID:
111134850
NCBI-ProteinID:
XP_022340019
UniProt:
A0A8B8EJQ5
LinkDB
All DBs
Position
5:40277293..40293059
Genome browser
AA seq
1115 aa
AA seq
DB search
MLCFITGRCLPTHGLNGELFINTIHSMSWHGPRNRFRDNHENWNEQERGYAGNGRGYNDR
YRNNNEEDFGEGPQRWRNEGRRGYRGGRGRNRGQRGRGGGRPEEHSEGDIAERGRRGGRR
GMLAGLRGREIGMFFAARSRAKKERQEIEMRPKVSMETSEMEKIQRVLDSVKDSPERRES
FGDGRQRPRTAPQGASSSSFVDEGSCSIDRPSTSMEASNFSEQSTGMETSPEKKKVKTEP
RAETSSSALSGAEEEDIRESLMPDMEEIKEFSEDLEQILPTNSEFELFQEAETQPHLNES
LKEELKEKMNNSLYKSMLSSRHRLPAYKQRKEIIDLINSNQIIVLSGETGCGKTTQVPQF
ILDHYIENGLGSSCNVICTQPRRISAISVAERVAVERGESQLEQSSVGYSIRLENRLPRK
HGSILFCTTGIILRRLESDPKLQSVSHIIIDEVHERDLLCDFLMVVVKDLVALRPDLRVI
LMSATLNAEKFSKYFNDCPHINIPGYTFPVKQYFLEDAVQLTRFKPGPTKPEPRWKRNKK
FKSREEDEKWNMQAWARNLSTKKYSPSTISALTQMDTKTINLDLVLELLHHIIFNMEDGA
ILVFVPGWKEISDLNNMLLKDSSIQSRNLRIVPLHSLMPTVNQREVFDRPPAGTRKIVIA
TNIAETSITIDDIVYVVDCGFMKVKDFNPETGLLSLDSYPVSRANALQRKGRAGRVQAGH
CFHLFTSLQYEEMQQYLAPEILRTRLEELCLMIKILKLGKIEPFVSRALDVPSKESVKAA
IVTLQNLQALDDNEELLPLGYHLARLPLDPHTGKMILFGAMFGCLDPICLIAACLSFKMP
FVTPLGKEADADRCKKALAEDSRSDHIMLIKAYKKWEEACCHGNGRKFCYDNFLTENTLR
MLKKMKKQFSELLYNIGFVSSCDPRNTFSNVHSDNENLITAVICAGLYPNIAKVRKPGKP
GKFQVSVLLQNGTRGKLHKASVNAYEKFFPSNWLIYHKIMKTTDIHVYDCSMVSPYPLLF
FGGKIAYSITNAKGKDVGCVTVDGWIPFWTEKATYDLVKDLRKQLDKILEDRITSPKVID
LTVKSKEQVIINAIVDLISKEEVNYHDFREEDNYE
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgctctgttttattaccggtagatgcttaccgacacacggattaaatggtgaattattc
attaacacaatacacagtatgagttggcatggaccaagaaacagatttcgagacaatcac
gaaaactggaatgagcaggaacgtggatatgcaggcaatggccgggggtataatgacagg
tacaggaacaacaatgaggaggactttggggagggtccccagagatggagaaatgaaggt
agacggggatacagaggagggcggggcagaaacagaggccagcgaggtagaggaggtggc
aggcctgaggaacacagtgagggagatattgctgaacgggggagacgaggtggaaggaga
ggaatgctcgctgggctaaggggccgagagattggaatgttttttgcagctcgttctaga
gcaaagaaggaaagacaagaaattgaaatgagacccaaggtttccatggaaacaagtgag
atggaaaagatacagagagtattagactcagtcaaggatagtccagagagaagggagagt
tttggggatggcagacagagaccaaggacagctccacagggggcatcctcttcttcattt
gtcgatgaaggaagctgttcaatagacagaccatctacatctatggaagccagcaacttc
agtgaacaaagcacaggaatggaaacgtctcctgagaaaaagaaggttaaaactgaaccc
agagcagaaacttccagcagtgccctttcaggtgcagaggaagaagatataagggagagt
cttatgccggatatggaagagatcaaggagttttcagaggatttagagcaaattttgcca
acaaactctgaatttgagcttttccaagaggctgaaacacagccacatcttaatgagtct
ttgaaagaggagctaaaagaaaaaatgaacaattctttgtataagagcatgctgtcgagc
agacatcgccttccggcttacaaacagaggaaggaaataattgacctcatcaactcaaac
cagattattgttttgagcggtgaaacaggatgtggtaagaccactcaggttccacagttc
atattggaccattatattgagaatggcttaggttccagttgcaatgttatttgtacgcag
cctagaagaatatcagctatttcagttgcagagcgtgttgctgttgagaggggggagagt
cagctggaacagtcttcagtgggctactccatcagactggaaaaccgcctaccaaggaaa
catggctccatcttgttttgtaccacaggaattatcctgagaaggctggagtctgatcca
aagctacaatcagtgtcccacatcatcattgatgaagtccacgagcgtgacttgctgtgt
gactttctgatggtggttgtgaaggacttggtagccctccgcccagatctccgggtcatc
ctcatgagtgctactctgaatgcggagaagttttcaaagtatttcaatgattgtccacac
atcaacattcctggatatacttttcctgtgaaacaatatttcctggaagatgcggttcag
cttacaaggtttaaaccaggtccaaccaaacctgaacccagatggaaaagaaataaaaaa
tttaaatccagagaagaagatgaaaagtggaatatgcaggcctgggctagaaatctgtca
accaaaaagtattctcctagcacaatatcagcactgacccagatggatacaaagaccatc
aaccttgatcttgtattggagctcttacatcatatcatattcaacatggaggatggagct
attctggtttttgttccaggatggaaagaaatatcagatttgaataacatgttattgaag
gattcctcaattcaaagtagaaatttacgcatagttcctctgcattctcttatgcctact
gtgaatcagagagaagtctttgataggccacctgcaggaacacgcaagattgtcattgca
accaacattgcagaaacaagtataactattgatgacatagtttatgtggtggactgtggt
tttatgaaagtcaaggattttaatccagagacaggactcctgtctttggacagctaccca
gtgtcccgagccaatgctctgcagcgaaagggcagagcaggcagagtgcaggctggccat
tgtttccatctgttcacaagtctacagtatgaagaaatgcagcagtacctagctcccgag
atcctgagaactcgacttgaggaactttgcctaatgataaagatattaaagctgggaaag
attgaaccttttgtcagcagagctttggatgtgccttctaaagaatctgtgaaagctgct
attgttaccttacagaatctgcaagcattggatgacaatgaagagttgcttcccttaggt
tatcacttggctcgactgcccctggatcctcacactggtaaaatgattctctttggagcc
atgtttggatgcttggatcctatttgcctcattgcagcttgccttagtttcaagatgccc
tttgttacacccttgggtaaggaagcggatgcagatcggtgcaagaaagcccttgctgaa
gatagccgcagtgatcacatcatgcttataaaagcctataagaaatgggaagaagcatgc
tgtcatggaaatggtcgaaagttttgttatgacaatttcttgacagagaatacactcagg
atgttaaagaaaatgaaaaagcagttttctgaattgttgtataatattggatttgtaagt
tcctgtgatccaagaaatacattttccaatgtacactcagacaatgaaaacttgatcaca
gccgtgatctgtgcaggtctttatcccaatattgccaaagtacgcaaaccgggcaaacca
ggaaaattccaagtatcagtacttctacagaatggaaccagagggaagctacacaaggca
tctgtgaatgcctatgagaaattttttccttcaaactggttgatttatcacaaaatcatg
aaaacaacggatatccatgtctacgactgcagcatggtatccccatatccactgctgttc
tttggaggaaaaattgcatactcgatcactaatgccaaagggaaagatgtaggctgtgtg
acagttgatggttggataccattctggacagaaaaagcaacatatgatcttgttaaggac
ctgaggaagcagctagacaagattctagaggacaggatcacgtcccccaaggttatagac
ctgaccgtaaagtccaaggagcaggtcatcattaatgccattgtcgacctcatctccaag
gaggaagtcaattatcatgatttcagagaggaggataactatgaataa
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