Crassostrea virginica (eastern oyster): 111134942
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Entry
111134942 CDS
T09197
Name
(RefSeq) squamous cell carcinoma antigen recognized by T-cells 3-like isoform X1
KO
K22611
spliceosome associated factor 3, U4/U6 recycling protein
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvn03041
]
111134942
03036 Chromosome and associated proteins [BR:
cvn03036
]
111134942
Spliceosome [BR:
cvn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
111134942
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
111134942
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
HAT_PRP39_N
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_14
Lsm_interact
LSM_int_assoc
RRM_occluded
RRM_11
UTP6_C
PRP6_TPR
DUF5452
KorB_C
DUF8400
Nuf2_DHR10-like
CARDS_D3
Mat89Bb
Motif
Other DBs
NCBI-GeneID:
111134942
NCBI-ProteinID:
XP_022340244
UniProt:
A0A8B8EK85
LinkDB
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Position
5
Genome browser
AA seq
944 aa
AA seq
DB search
MAESMEKEEADSLDKIAEEDEDGSEDADMQSDNAGSSDDDNDDDDDEEANKKKLEELQKQ
IEENSYFYDGHTEIIKILRNMGELDKLRNAREKMSQYFPLTQELWLEWLRDEIPLATDEK
ERKHVYDLFERAVKDYLSVDVWLEYVQFCIGGMGQIDGISHIRDVFERALGTAGLHVSAG
SSLWEAYREFENALMSGYMPQPGQVATPEQEEKFNSQQDRVVSLFKRQLSIPLMDMQETM
GEFKEYFEEEIDDGTKEAYHKALEKLQKLLPYEEALTAAEPPRLEAYLSYIDYEMTHDDP
ARIQNIFERALQENCLNPELWLKYAKYLDHKRLQVEPLVLGMYERSVRNCPWCSQLWQRY
VLAMERFHKPQTEIKELVDRALQCGFNSGADYLVVWSTYCDYLRRRIKWDQDHDDELELF
RLTIESAVNFLSYYGVEADPKGSLQQFWAVIEGKFCKNMTRAREIWNDIMSAGRNHQAAL
WLDYLKIERAYGDNKHCRKLLNRALNVVTDWPESIVEAMINFEREEGDLEHYDAAVTKCE
VHMDAVNKERKEAEKEEKRVNRRIEKKQKRFDSKQKGKKGPEKKDKSPQKITGGESEKEE
NKKRKASEESNEFKVPEVPSSKGPPPPGFKEPAPKGSKGPPPPGFKGPPPPDEEILNKGE
GDGPHAQSDFVEKAEQDPEKSKRTAFVSNLDYSIDEDGIGQIFAKCGEITDIRLVKTIKG
KSKGYAYVEFKDELGMLEALKLDRTPMQGRPVFVSKCEDRSQKKAQFKFSTEMEKNKLFV
KNLPFTCSKDALIQIFSEHGPLREVRLVTYRSGAPKGLAYVEFEDAQDAAKAVVKTDGLR
IGDHEIEVAISNPPQRGTPLNVRDETSFTPSLGGGKKETESRGKARTQLSLVPRSLQRTP
APAKGARPASKPPPPSESNGQPAAATASAAKMSNDDFRKMLLKK
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaagcatggaaaaagaagaagccgacagtttggataaaattgcagaagaggat
gaggatgggtcagaagatgcagatatgcagtcagataatgctggctccagtgacgatgac
aatgacgacgacgatgacgaagaagcaaacaaaaagaaacttgaggaacttcaaaaacag
atagaggaaaattcctacttttatgatggccacactgaaataataaagatactgcgcaac
atgggagaactcgataagctaaggaacgcaagagagaaaatgagccaatacttccctttg
acacaagaactgtggttggagtggcttagagatgaaattcctttggcaactgatgagaaa
gaaaggaaacatgtatatgacttatttgaaagagctgttaaagactatctttctgtggat
gtttggttggagtatgtacagttttgtattggtggaatgggacagattgatggcatctct
cacattcgggatgtctttgagcgggctctgggaacagctggactccatgtgtcggcaggg
tccagcctgtgggaggcatacagagagtttgagaatgcactcatgagtggttacatgccc
caaccaggtcaagtagcaactccagagcaagaggaaaagtttaacagtcagcaagataga
gttgtttccctgttcaaaaggcagctatcaatacctctgatggatatgcaagagaccatg
ggtgaatttaaagaatactttgaagaggaaatagatgatgggaccaaagaagcttatcat
aaagccctagaaaaactgcagaagttgttaccttatgaagaagcattgacagctgcagag
ccacctcgactggaggcctatttgtcttacatagactacgagatgacacatgatgatcct
gctaggatacaaaatatattcgaacgagctttacaggaaaattgcttaaatcctgagctg
tggttgaaatatgccaaatatcttgatcacaagaggctacaggtagagcccttggtcctg
ggaatgtatgagcggtccgtccggaactgtccctggtgttcccagctgtggcagaggtat
gtcctggcgatggagagatttcacaagccacagacagaaatcaaagaattggtagacaga
gccttgcagtgtgggtttaactcgggggccgattacctggttgtgtggagtacgtactgt
gactatctccgacggagaatcaaatgggatcaagaccatgacgatgaacttgaattattc
cggctaaccattgaaagtgctgtcaactttttatcatattatggtgtggaggctgatcca
aaaggaagcttacagcagttctgggctgtcattgagggcaagttttgtaagaatatgaca
cgtgcaagagagatctggaatgacatcatgtcagcgggtagaaatcaccaggcagctctt
tggttagattatctcaaaatagaaagggcatatggtgacaacaagcactgtcgaaaactc
ctgaaccgagcgctgaatgtagtgactgattggccagagtccattgtagaggctatgatc
aattttgaaagggaagaaggggatttagagcattatgatgcagctgtaacaaagtgtgaa
gtacacatggatgcagtgaacaaagagagaaaggaggctgaaaaagaggagaagcgggtg
aatagaaggatagaaaagaaacagaaaaggtttgattccaagcagaaaggcaagaaaggt
cccgaaaagaaagataaatcccctcagaaaatcacaggaggggaatcggagaaagaggaa
aacaagaaaagaaaggcatcagaagaatccaatgaattcaaggttcctgaagtacccagt
tctaaaggaccaccaccccctggattcaaggaaccagctcctaaagggtcgaagggaccc
ccacctccagggtttaaaggcccccctcccccagatgaagaaatactcaacaaaggggaa
ggggatggtccacatgcacagtcagactttgtggaaaaagcggaacaggatccggaaaaa
tccaaaagaacagctttcgtcagcaatctggattactccatagacgaagatgggattggt
cagatatttgcaaagtgtggggaaataactgatattcgtttagtgaaaactatcaaagga
aaatcaaaagggtatgcttacgtggaattcaaggatgagcttggtatgctggaggccttg
aaactggacagaacaccaatgcagggtcgtccagtctttgtctccaagtgtgaggacaga
agccagaagaaagcccagtttaagttttcaacagaaatggagaaaaacaaactatttgtg
aagaatcttcctttcacctgctccaaggacgctctcattcagatttttagtgagcatggt
cccctgcgggaggttcgactggtcacctacaggagcggggcccccaaggggttggcgtat
gtggagtttgaagatgcgcaagatgcagcaaaagctgtggtaaagacagatgggctgagg
ataggagatcatgagattgaggtggccattagcaaccccccgcagagaggcacccccctc
aatgtcagagatgagacctcattcaccccctctttgggagggggaaagaaagaaactgaa
tcgagagggaaggcacgcacgcagctgtctttggtaccgcgctcccttcagcgaactcca
gccccagccaagggggcacggcctgccagtaaacccccacccccctcagagtctaacggg
caaccagcagcagccactgcgtcagcggccaaaatgagcaatgatgattttaggaaaatg
ttgctgaaaaaataa
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