Crassostrea virginica (eastern oyster): 111134971
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Entry
111134971 CDS
T09197
Name
(RefSeq) general transcription factor IIH subunit 1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03022
Basal transcription factors
cvn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111134971
09124 Replication and repair
03420 Nucleotide excision repair
111134971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvn03021
]
111134971
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111134971
Transcription machinery [BR:
cvn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
111134971
DNA repair and recombination proteins [BR:
cvn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
111134971
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
Motif
Other DBs
NCBI-GeneID:
111134971
NCBI-ProteinID:
XP_022340309
UniProt:
A0A8B8EL21
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Position
1:complement(63895327..63902514)
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AA seq
563 aa
AA seq
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MAARSEEVLLIVNHVRNKKTDGTLYMMGERLGWMQGSKSTFSISYVYADIKGQKISPDSK
EKVQLQLVMHDGGANTFHFINPKGRAAAVADRDSVKDLLQQLIPKFRRKLSSELEEKNRM
LQENPELFQLYKDLVVTGVLTADEFWASRKSQNSVKPDKSQNVGVSAAFLADIKPQTDGC
NGLKYNLTADVIESIFRTYPMVKKKHAEHVPHDMTESEFWTRFFQSHYFHRDRTVMGAKD
VFTECAKSDEKDMKEEISFKMIDPFLDLTKISDSSLHEDYRGVTEDTRISNNVTNGTMIR
RFNHHSTMVLKACTKDSQNAQSSSQPDASVMSSDTQNGGAFQVNGVVNGDQGPSTSKDYW
EPAAKKQKLQEKIHMDDLKDSNSKKNVNLRLHKMEGYLHGPTPVMMSRYTTSEDLVHASE
SVMQDIYQWSSDLSNVLSGSQAIVILSELSPGGALMKGTSHQELNQIVPSEVQEEVKANY
SALLELLRHFWTCFPVSSKSLEEKVVKMKSTLDRFQMAKLIPLRDRLREYHYTLDLTGHM
EELLGAANRKFDLWQSRKSGGRR
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atggcagcacggtcagaagaggttctgctgatagttaaccatgtgcgcaacaagaagacg
gatggaacactttacatgatgggagagaggcttggctggatgcaaggcagcaagagcaca
ttctccatcagttatgtatatgctgacataaaaggacaaaaaatttcaccagattctaaa
gaaaaagttcagctgcagttggttatgcatgatggaggtgccaatacatttcacttcatc
aatcccaaagggcgagctgcagccgttgctgacagggatagcgtgaaggatttactgcag
caactgattccaaaattccgacggaaactcagcagcgaactagaggagaaaaacaggatg
cttcaggagaacccggagttgttccagttatacaaagacttggttgtgacgggggtcctt
accgctgatgagttttgggcttctcggaagagtcagaatagtgtaaaaccagacaaatct
caaaatgttggggtatcagctgcattcttggctgacataaaacctcaaacagacggatgc
aatggactcaagtataatctgactgctgatgtcattgagtctatattccgcacatatccc
atggtgaaaaagaagcatgctgagcatgtgcctcatgatatgaccgagagtgagttttgg
accagattttttcagtcccattattttcatagagatcgcactgttatgggagctaaggac
gtttttacagagtgtgccaaaagtgatgagaaagatatgaaggaagaaatctcttttaag
atgattgaccccttcttggatctgacaaaaatctcggattcttctctccatgaggattat
cgaggagtgacagaagacacaagaataagtaataatgtgacaaatggaacaatgattcgc
agatttaatcatcattcaactatggtgctaaaagcttgtacaaaagactctcaaaatgct
cagagctcaagtcaaccagacgcttctgtcatgtctagtgatactcaaaatggtggagct
ttccaggtgaacggtgtggtaaacggagaccaaggaccaagtaccagcaaggattactgg
gaaccagcagccaagaaacagaagctgcaggaaaagattcacatggacgatctaaaggac
tccaacagtaaaaagaatgtgaacctaagactgcataaaatggaggggtatttacacggt
ccgacacccgtaatgatgtcccgctacaccacaagcgaggatcttgtccacgcctccgag
tcagtgatgcaggacatctatcagtggtcatcggacctctcaaatgtgctctcgggatca
caagccattgttattctcagtgaattatcaccaggaggggcacttatgaaaggaacaagt
caccaggaactgaatcagatcgtgccgtcagaggtacaggaggaagtgaaggctaactac
agtgccctgctggagttgctgcgacatttctggacctgtttcccagtgtcctccaaatcc
ttggaagaaaaggttgtaaaaatgaaatcaacactggacagatttcaaatggcaaagttg
attccactcagagaccgcctccgggagtatcactacactcttgatttgactggtcacatg
gaggaactattaggtgcagcaaacaggaagtttgacctttggcagtccagaaaatcgggc
ggcagaaggtga
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