Crassostrea virginica (eastern oyster): 111135329
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Entry
111135329 CDS
T09197
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A-like isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03082
ATP-dependent chromatin remodeling
cvn03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111135329
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
111135329
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cvn01009
]
111135329
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvn03021
]
111135329
03036 Chromosome and associated proteins [BR:
cvn03036
]
111135329
Protein phosphatases and associated proteins [BR:
cvn01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
111135329
Transcription machinery [BR:
cvn03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
111135329
SWI/SNF complex
111135329
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
111135329
PBAF complex
111135329
SWI/SNF complex
111135329
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
Motif
Other DBs
NCBI-GeneID:
111135329
NCBI-ProteinID:
XP_022340997
UniProt:
A0A8B8EM54
LinkDB
All DBs
Position
5:complement(54330665..54337357)
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AA seq
373 aa
AA seq
DB search
MAMFGTKTFGEKPKPFQIEEDGEFYYIGSEVGNYLRMFRGSLYKKYPSMWRRLLTVEERK
RIAEFNTGAPSLATNITLLKASEVDAIFEGNDDMFKTVSINSDSSYQISRDYKSKRNNWV
PTVPSSSHHLDAVPCATPINRNRLGKKQVRTFPMCFDDTDPASIHDNANLQEQLVPIRLD
MEYEGQKLRDCFTWNKNESLITPEQFAEILCDDLDLNPINFIPAISQAIRQQIEAYPQEN
LLEEQKDQRVILKLNIHVGNISLVDQFEWDMSEADNSPEDFAQTLCSELGLGGEFVTCIA
YSIRGQLSWHQRTYAFSEQPLPIVEVAIRNQNEADAWCPFLETLTDAEMEKKIRDQDRNT
RRMRRLANTAPSW
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgtttggcacaaagacatttggagaaaagccgaaaccgtttcaaatagaagaa
gatggtgaattttattacattggatctgaggttgggaattacctccgtatgttcagggga
tctttgtacaagaagtatccttccatgtggagacggctattgacagtggaggaaaggaaa
cgaatcgcagaattcaatactggtgccccctccctggccaccaacatcactctgctgaag
gccagcgaagtggatgccatctttgagggaaatgacgacatgttcaaaacagtctccatc
aacagtgattcctcctatcaaataagccgggattacaaatcgaagaggaataactgggtt
cccactgttcccagcagttcccatcacttggacgctgttccatgtgccaccccaatcaac
cgaaacagattagggaagaagcaagtcagaaccttccctatgtgttttgatgacacagat
cctgctagtatccatgacaatgctaatctacaggaacagttggtgccgatccgactggac
atggagtacgaggggcagaaactgcgggactgcttcacctggaacaagaatgagagcctt
atcacacctgaacaatttgctgagatcttgtgtgatgacctagatctgaaccccatcaac
tttatcccagccatttctcaggccatccgacaacagatcgaggcgtatcctcaggagaac
cttctggaggagcagaaggaccagcgggtcatcctcaagctcaacattcacgtgggcaac
atttccttggtggaccagtttgagtgggatatgtcagaggcagacaactcaccggaggac
ttcgcccagactctgtgctccgagctaggtctaggaggagagtttgtgacctgtatagcc
tacagtatcagaggtcagctgagctggcatcagagaacctacgcattcagtgagcagcct
ttacctattgtggaagtcgccatcaggaaccagaatgaggctgacgcctggtgtccgttc
ctagaaaccctcaccgacgccgagatggagaaaaagattcgcgaccaggacagaaacaca
aggaggatgaggcgattggctaacactgccccatcatggtag
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integrated database retrieval system
