Crassostrea virginica (eastern oyster): 111135364
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Entry
111135364 CDS
T09197
Name
(RefSeq) fibril-forming collagen alpha chain-like
KO
K06236
collagen type I alpha
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn04512
ECM-receptor interaction
cvn04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111135364
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
111135364
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cvn00536
]
111135364
Glycosaminoglycan binding proteins [BR:
cvn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111135364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
111135364
NCBI-ProteinID:
XP_022341069
UniProt:
A0A8B8EME4
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All DBs
Position
1:29584272..29617677
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AA seq
1437 aa
AA seq
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MKMSGATLFWTVLTIFLLNVITISGQKLSAYHGQKCIYEGDIIAPSSCESCRCVNGTYEC
YFIEGCEEESKTREIDQESFTGEIVDGTLIDTRGPAGHRGVQGPRGKQGPRGDPGGNGEN
GIPGPPGPPGVPDMSADQAYANYYASVYGPQFKAGGAQRPQYMTANMGPYGPRGPPGPTG
PSGQQGLQGPRGEPGDPGPPGQTGSRGPTGLPGVKGIKGSSGKNGEVGPLGLPGRKGPSG
APGMPGIPGAKGHRGLNGISGPSGEQGLPGEKGSMGPPGPPGPPGLQGQRGVPGERGRDG
DRGPSGMNGVDGLPGPVGPPGVIGQQGSPGVPGIPGPKGEAGAPGPKGSAGLQGQRGESG
VPGPQGDEGAPGMNGMAGAPGEKGSSGDPGPAGVPGFPGPRGPQGIAGSPGLNGPKGATG
QPGQAGYKGERGPKGMPGSSGDRGHPGHPGPEGKRGLRGALGDPGPIGPPGDRGGLGERG
LPGPVGDPGSPGEEGEPGPRGSRGEPGPNGEPGRMGPPGPRGLRGTEGRAGLDGIQGRVG
DPGISGGDGRPGEMGPPGNQGIVGVQGPQGPAGARGAPGRDGNPGATGPDGPQGDPGPVG
ESGPTGNPGPQGVTGERGPVGNQGPRGYPGPPGNTGPPGEAGKPGDPGPPGAAGNPGRNG
ANGERGFPGDQGVPGLMGDPGSPGPVGPAGRDGERGLPGPKGDRGDIGPPGPAGLRGPRG
SQGLRGPKGEVGEPGETGPDGAPGRAGPQGAQGPMGEMGPLGLIGDPGSKGDAGIAGEPG
PRGAPGERGAQGEEGAAGVQGPPGPTGPPGARGQNGLPGAKGAEGDRGIVGAPGPRGTPG
VNGIFGRKGERGDRGITGIPGQPGPTGRDGPQGYPGKSGPQGTQGPAGGDGLPGTRGEPG
PPGPRGEDGVPGIPGQPGQKGARGEDGSEGPMGPVGPMGNAGEVGLPGDPGVRGERGPMG
PVGQIGLPGESGKPGQDGLPGKQGPQGPTGNPGAVGEQGPAGNAGPDGAPGISGRPGEKG
PAGEMGPSGPPGLPGFAGPPGITGATGPGGERGLRGEKGPAGSPGAPGVRGPPGAHGIQG
SSGERGDNGADGEKGDPGLIGLPGLPGPEGPPGDPGQMGPAGPVGQRGPNGRRGMPGEEG
NPGAPGHQGPLGPRGAKGDSGRAGVMGEMGPPGSPGIPGPSVYGAAMQGWFQRAPVFKGP
SYQGDEAKTPETENVFKALQDITEELRKLKFPDGSKESPARTCQQIKKNNPDAQDGYYWV
DPNAGVKLDAIQVYCDFRSKKIYTCVLPTMNITQKISRPEKTLLWYADEYLPEKEIPYEA
KIVQIKFLQSLHDKVEQEITYHCKNTVAYRDAQTKSKDKALMFMTFNGDWLSANSKKKFR
YKVKDDDCQNKNDMWGKTVFEIKTKKTNRLPIMDIGITDIGDDNQSFKVELGRVCFS
NT seq
4314 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgagtggtgcgacactgttttggacagttctaacaatattcctccttaacgta
attacaatttctggacagaagctatctgcataccatggacaaaaatgtatttatgagggg
gatataatagcaccttcaagttgtgagtcttgcagatgtgtgaatggaacttatgaatgt
tatttcatagaaggatgtgaagaagaatcaaaaactagagaaatagaccaggaaagtttt
acaggtgaaatcgttgatggtacactcatagatacacgcggaccagctggacatcgggga
gtacaaggccctcgtggaaaacaggggccacggggtgatcctggcggaaatggtgagaac
ggaataccaggtcccccgggacctcctggtgtaccagacatgtcagctgatcaagcctat
gccaactactatgcttccgtctatggaccacagtttaaagctgggggagctcaaagacca
cagtatatgactgccaatatgggaccatatggaccacgcgggcccccgggaccaacagga
ccctccggccaacaagggttgcaaggacctcgaggtgagccaggagatcccggaccgccg
ggtcaaacaggcagtcgcggacccactggtctaccaggtgtaaaaggaatcaaaggctct
tctggcaaaaatggagaggttggacctttaggattacctgggagaaagggtccttctggc
gctccaggaatgcccgggatacccggtgcaaagggacacaggggtttgaatggaatctca
ggaccttcgggagaacaaggcttacccggagaaaagggatccatgggtccacctggtcca
cctggaccgccaggtcttcaaggacaaaggggagttccgggagagcgcggacgtgatgga
gacaggggcccttcaggaatgaatggagtggatggtcttccgggtccagtcggacctcct
ggtgtcataggtcaacaaggttcccctggtgttcctggcattcctggaccaaagggagag
gcgggtgctccaggtcccaaaggttccgctggtctgcaaggtcaaagaggagaaagcggt
gtcccggggcctcagggtgacgaaggagcccccggaatgaatggaatggcgggtgcacct
ggtgaaaagggatcatcgggcgacccaggacccgctggtgttcccgggttcccgggaccg
agaggaccacagggtattgctgggtcaccaggacttaatggaccaaagggagcaactggg
caacctggccaagctggatacaaaggtgaacgtggacccaaaggcatgccgggaagttca
ggtgacaggggtcacccgggtcacccagggccagaaggcaaacggggtttgagaggagct
cttggagaccccgggccaataggacccccaggggacaggggaggtctgggagaacggggt
cttcctgggcctgttggagatcctgggtccccaggggaagagggggagccaggaccacga
gggagtagaggtgaaccagggccgaacggtgaaccaggaagaatgggaccccccgggcct
cgcggacttaggggtactgagggccgtgctggtctcgatggaatacagggacgagtgggc
gatccaggtatcagtggaggtgatggacggccgggagagatgggacccccggggaatcag
ggcattgtgggtgtccaaggaccccagggaccagcaggtgcaaggggtgccccagggaga
gacggcaatccaggtgccactggtcctgacggacctcaaggtgaccccggaccggttgga
gaaagcggacctacaggaaacccaggaccacagggagtgactggcgaacgcggacctgta
ggaaaccagggaccaagaggatatcccggaccaccaggtaatacagggcccccaggagag
gcgggcaagcctggagaccccggaccgccgggtgccgctggaaacccaggaagaaatgga
gcaaatggagaacgcggatttccaggtgaccaaggtgttccagggttgatgggtgaccct
ggttcccccggacctgttggaccagccggtcgtgacggagaaagaggacttccagggcca
aaaggtgaccgaggagacatcggaccgccaggaccggccggacttagaggaccacgtgga
tcacaaggattgaggggaccaaaaggagaagtgggtgaaccaggagaaactggtcccgat
ggagcaccgggcagggccggaccccagggggcacagggtcccatgggagagatgggaccc
ttaggattaatcggtgatccaggaagtaaaggtgatgctgggattgccggtgaaccgggt
ccccgaggggcaccgggagagaggggagcacagggagaagaaggtgccgcaggggttcag
ggcccaccgggacctactggacccccaggtgcccgtggacaaaatggattgcctggagcg
aaaggagccgaaggagatcgcgggattgttggtgccccaggaccaagaggaactccagga
gtaaatggtattttcggaagaaagggtgaacgcggtgaccgaggaattactggaatccct
ggccagcccggacccacaggaagagatggccctcagggatacccaggaaaatccggaccc
cagggaacacagggcccggccggaggagacggtctcccaggtactcgcggtgaaccaggt
cctccgggccctaggggtgaagatggagtgccaggtattccgggacaaccaggacaaaag
ggagcaagaggtgaagatggatcagaggggccaatgggtccagttggtcccatgggaaat
gctggtgaagtggggttacctggagaccctggagttcggggagagaggggacccatgggt
cctgtcggtcaaattggtttacctggagaatctggaaaacctggacaggatggcctccca
ggtaaacagggtccccaaggacccactggaaatcctggtgctgtaggagagcaaggacct
gctggaaatgccggaccagatggtgcccctgggatcagtggacgtcccggagagaaagga
cccgccggggaaatgggaccctccggacccccgggcttacctggctttgcgggaccccca
ggaatcaccggtgccacaggaccaggtggcgaaaggggattacggggtgaaaagggacca
gccggttcccctggggctcctggagtccgcggaccaccgggtgcgcacggaattcaagga
agctctggagagagaggcgataatggagctgatggtgaaaagggagatcctggattgata
gggttacctggcttgcctggtccagagggccctccaggagatccggggcagatgggacca
gccggccctgttggacagcgtggaccaaatggaaggaggggaatgcctggagaagaagga
aatcccggagcacccggacatcagggaccattaggaccacgaggagccaagggagacagc
ggacgtgcaggtgtcatgggagagatggggccacctggttcaccaggtatcccaggtcct
tctgtttatggcgctgctatgcaaggatggttccagagagcgccagtctttaagggacca
tcatatcagggagacgaagctaaaacaccagagactgaaaatgtatttaaagcgcttcag
gatattaccgaagaactgagaaagttgaaatttccagacggttctaaagaatcacctgct
agaacttgtcagcaaattaagaaaaacaaccctgatgctcaagatggatactattgggtt
gatcctaatgctggtgtcaagttagatgcgatccaagtgtattgtgattttagaagtaaa
aagatatacacatgtgtattgccaaccatgaatatcacacagaaaatttctcgaccggaa
aagactctactatggtatgccgatgaatatctgccagagaaagagattccatatgaagcc
aaaatagttcaaatcaaattccttcaaagcttgcacgataaagtagagcaagagattaca
taccactgcaaaaacactgttgcttaccgtgacgcgcagaccaagagcaaggacaaagcc
cttatgtttatgacattcaacggagattggttgagtgccaacagcaaaaagaaattcaga
tacaaagttaaagacgatgattgtcagaataagaatgatatgtggggaaaaactgtgttc
gaaataaaaaccaaaaagaccaacagattgcctatcatggatattgggattacggacata
ggagatgacaaccaatcttttaaagttgaattaggtcgtgtatgtttttcgtaa
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