Crassostrea virginica (eastern oyster): 111135387
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Entry
111135387 CDS
T09197
Name
(RefSeq) splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111135387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvn03021
]
111135387
03041 Spliceosome [BR:
cvn03041
]
111135387
03036 Chromosome and associated proteins [BR:
cvn03036
]
111135387
Transcription machinery [BR:
cvn03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
111135387
Spliceosome [BR:
cvn03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
111135387
Complex B
111135387
Complex C
U2 SnRNP specific factors
111135387
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
111135387
TFTC complex
111135387
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
111135387
NCBI-ProteinID:
XP_022341110
UniProt:
A0A8B8EMH5
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All DBs
Position
5:19358365..19367998
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGITCAVHGNFSGSKLQEIIVSRGKILELLRHDPNTGKIYPVLSVEVFG
MIRSLMPFRLTGGSKDYVVVGSDSGRIVILEYIPQKNTFEKVHQETFGKSGCRRIVPGQY
LAVDPKGRAVMIGAVEKQKLVYILNRDASARLTISSPLEAHKANTLVYHMVGVDVGFENP
TFACLEIDYEEADMDHTGEGAKNTQQLLTYYELDLGLNHVVRKYSESLEEHANFLISVPG
GSDGPSGVLICSENYITYKNLGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIILKYFDTVPVAASMCVLKSGFLFISSEFGNHYLYQ
IAQLGDDDDEPRFSSASQLEEGEPHFFSPRPLKNLVQVDEMDSLSPITHCQIADLANEDT
PQLYTLCGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVKKNIDDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSQLGDDALVQIYPDGIRHIRSDKRVNEWKTPG
KKSIVKCAVNQRQVVIALTGGELVYFEMDPTGQLNEYTERKEMSSEVVCMALGRVPVGEQ
RCRFLAVGLSDNTVRIISLDPSDCLSPLSMQALPEPSESLCIVEMGGTEAKEETGEPGTV
GGLFLNIGLQNGVLLRTVLDTVTGDLSDTRTRYLGVRPVKLFRISMQGSEAVLAMSSRSW
LSYTYQNRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVSHP
LQHTPRKFVIHPETNNLIVIETDYNAYTEATKMERKQQMAEEMVEMVSAEEREMAAEMAA
NFLNEERSESIFGAPKAGPGMWASIIRIINPISGNTLEKIQLEQNESVHSIALLKFASRG
DDQFVLVGVARDLVLNPRSLTGGFLYLYQLEDGGESLKLLHKTPVEDVPGAIASFQGRVL
IGVGRYLRIYDIGKKKMLRKCENKSIPNYVSGIHTLGSRIVVSDVQDSFHFVRYKRQENQ
LIVFADDTNPRWITASCLLDYNTVAGADKFGNISIIRLPGDVSDDVDEDPTGNKALWDRG
LLNGASQKADIMMNFHLGEMVTSLQRATLIPGGSESLVYTTLSGGIGMLVAFTSHEDHDF
FQHLEMYMRTEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEMFNSMDPVKQKSVSEELDRT
PSEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtacaacctgactttgcagagggccactggcataacttgtgccgtgcatggc
aatttttcagggtccaaattgcaagaaattattgtatccaggggtaaaattcttgaactt
ctaagacatgacccaaatactggcaaaatttatcctgttttgtctgtggaggtgtttgga
atgatccgttccctaatgccatttagactgacaggaggatcaaaagattatgttgtggtt
ggatctgattctggaagaattgttatactggaatatattccacagaagaacacatttgaa
aaggttcaccaggaaacatttgggaaaagtggatgtagaaggattgtgccaggacagtat
cttgcagttgatccaaaaggcagagcagtcatgattggagctgtagagaagcagaaactg
gtgtatattttgaatagagatgcctctgctcgactgaccatttcttccccattggaggca
cacaaagccaacacccttgtgtaccacatggtaggggtagatgttggctttgaaaatcca
acatttgcctgtctggaaattgattatgaggaggcagatatggatcacactggagaagga
gctaaaaacacacagcagctgttgacatattatgagttggacttggggttaaatcatgta
gtcaggaagtactcagaatcactggaagaacatgctaactttcttatctcagtgccagga
ggcagtgatgggccaagtggtgtcctgatctgttctgaaaattatatcacttacaaaaat
ctgggggaccagccagacatcagatgtcccatcccaaggagaaggaatgaccttgatgac
cctgaaagagggatgatatttgtctgcagtgctacacacaaaactaagagcatgttcttt
tttctggcacaaactgagcaaggcgatatcttcaaaatcactcttgaaacagatgaagac
atggttactgagatcatactgaagtattttgacacagtacctgttgcagcaagcatgtgt
gtgctgaagtctgggtttcttttcatatcatcagaatttggaaaccattacttgtaccaa
attgcccagttgggagatgatgacgatgagcccagattcagcagtgcatcacaacttgag
gaaggagaacctcacttcttctcacctcgacccttgaaaaatcttgtgcaagttgatgag
atggatagtttgtctccaataacacattgtcagatagcagatttggcaaatgaggatacc
ccccaactgtacacactgtgtgggaggggccccaggtctacgcttagggtgcttaggcat
ggtctagaggtatctgaaatggctgtatcagaactgcccggtaaccctaatgctgtctgg
acagtgaaaaagaatattgatgatgaatttgatgcttacatcatagtgtccttcgtcaat
gctactctggtactgtctattggagagactgtagaagaagtgacagactctgggttcttg
ggaaccacacccacactgtcctgttcacagcttggagacgatgcccttgtgcagatttat
cctgatggaattcgacatatccgttcagacaaaagagttaatgagtggaagactccaggc
aaaaagagcattgtcaaatgtgcagttaaccagagacaagtggtgattgctttaactgga
ggagaattggtctactttgaaatggatccaacaggacaattgaatgagtacactgagagg
aaggagatgtcatcagaggtggtgtgtatggctttaggaagagtcccagtaggggagcag
agatgccgctttctggctgtgggtttgtccgacaacacagtgagaattatctcccttgac
ccttcagattgtttatcaccattaagtatgcaagcattgccagaaccgtccgagtctctg
tgtattgtagagatgggaggaacagaggccaaggaggaaacgggggagcctggcacagtt
gggggattgtttctcaacattggtctacagaatggtgtactgctgaggacagtgttggac
actgttacaggagacctttcagacactcgcacacgatatttgggagtgagacctgtcaag
ttgttcagaatcagtatgcaaggttcagaagctgtcttggctatgtcaagcagatcctgg
ctaagctacacgtaccagaatagatttcatttaacacctttatcatatgaaacattagaa
tacgcatcaggttttgcatcggaacagtgtccagaaggcattgtagccatctccaccaac
actctaagaattttagctttagaaaaattaggagcagtgttcaatcaagtatctcaccct
ctgcagcacacaccaaggaagtttgtcatccatccagagaccaacaatctcatagtaatt
gaaacagattacaatgcctacaccgaagccaccaagatggaaaggaaacagcaaatggca
gaagaaatggtggagatggttagtgctgaagagagagaaatggcggcagagatggctgca
aacttcctcaatgaggagcggtctgagagtatatttggggccccaaaggctggccctggt
atgtgggcatccattatccgaatcattaatcccatctctggcaatacattggagaagatc
cagcttgaacaaaatgagtcagtgcatagtattgccttgttgaagtttgccagtagaggg
gatgatcagtttgtgttggtgggcgttgccagagacttagtgttaaatccacgatcttta
actggaggatttctctatctttatcaactggaggatggaggagaaagtctgaaactactt
cacaaaactcctgtagaggatgtgcctggtgcaattgcatctttccaaggtcgtgttctg
atcggagtgggaagatacctacgaatatatgatataggaaagaagaaaatgttgagaaaa
tgcgaaaataagagcattccaaactatgtgtctgggattcatacccttggaagtcgtatt
gtggtatccgatgttcaggacagtttccattttgtgagatacaagcgacaagagaaccag
ttgatagtgtttgctgatgacactaacccaaggtggatcacagcctcctgtctgttggat
tataacactgtggcaggggcagacaaatttggcaacatttctattataaggctgccagga
gatgtaagcgacgatgttgatgaagatcctacaggaaacaaggcattatgggataggggt
ctcctgaatggagcatcacagaaggcggatatcatgatgaacttccacctgggtgagatg
gtgacttccttgcagagggccacgttaattcctggaggttctgaatctttagtctacacc
actctgtcgggcgggataggaatgcttgtggcattcacttcacatgaggatcatgatttt
ttccaacacttggagatgtacatgagaacagaacacccaccattgtgtgggcgggatcac
ctgtctttccgctcttactatttccctgtaaaaaatgtgatagatggagacctgtgtgag
atgtttaactcaatggacccagttaaacaaaagagtgtgtctgaagagctagacagaacc
ccgagtgaagtctccaaaaagctggaagatattcgcacgagatatgccttctga
DBGET
integrated database retrieval system
