Crassostrea virginica (eastern oyster): 111135550
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Entry
111135550 CDS
T09197
Name
(RefSeq) RNA-binding protein 39-like
KO
K13091
RNA-binding protein 23/39
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvn03041
]
111135550
Spliceosome [BR:
cvn03041
]
Common components
Common spliceosomal components
General mRNP proteins
111135550
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_7
RBD_DEAH11
Nup35_RRM_2
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
111135550
NCBI-ProteinID:
XP_022341412
UniProt:
A0A8B8ENC4
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All DBs
Position
5:57124153..57131101
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AA seq
548 aa
AA seq
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MADDLDVEAMLEAPYRKEDDGRGDADRDREKRKKRSSDRDRDRDRDRDRDRDRDRDRDRE
RRRSRSRDKHRDRDRDRDRHRDHERHRGRDRDRERRERKRSRSREKRRKSRSKSKERKKS
RSPERERRPRSNSKSPMRYIRQPGPELTPEERDARTVFCMQLSARIRPRDLEEFFSSVGK
VRDVRLIMDNKTRRSKGISYVEFQDTDSVPLAIGLTNQKLLGVPIIVQHSQAEKNRVGNP
TSILTKGNIGPMRLYVGSLHFNITEEMLRGIFEPFGKIDDIKLIRDHETNRSQGYGFITF
HDSEDAKKALEQLNGFELAGRPMKVGHVTERQGEIQGASMLDSDEMDRAGIDLGATGRLQ
LMAKLAEGTGFQIPEYAASALNITQQAPGLAPVSAPGASPNVSAILGSQAPGQDSTAPPI
ATQCFMLSNMFDPTAESRSSWDQEIRDDVIEECNKHGGVLHLYVDKASPQGNVYVKCPTI
SAAVASVRALHGRYFGGKMITAAYVPLPNYHSLFPDAVRANQLLLPSTQALQAGYPTNMF
AAVQPVIR
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgatttggacgttgaggctatgttggaggcaccctacaggaaagaggatgac
ggaagaggagatgcagatagagacagagaaaagaggaaaaagagaagtagtgaccgagat
cgagacagggacagggatcgagatagggatcgagatagagatagggatagggatagagag
cgtagaaggagtaggagtcgggacaaacatagggatcgagacagagaccgagacagacac
cgagatcatgagagacacagggggcgagatcgagaccgagagcgtcgagaaagaaagcgt
agtagaagtcgagaaaaacgcaggaaaagccgtagtaaatcaaaggagagaaagaaaagc
aggtccccagagagagaaagaaggccaaggagcaatagcaaaagccctatgagatacatc
agacaaccaggtcctgagcttacaccagaggaaagggatgccaggacagttttctgtatg
cagttgtctgctagaatcaggcccagggacttggaggaattcttttcatctgttggaaag
gtccgagatgtaagactaattatggataacaagacgaggagatcaaaaggcatttcctat
gtggaattccaggacacagattcagtaccactggcaatcggactaacaaaccagaagcta
ttgggtgtccccattattgtgcagcactctcaggcagagaaaaatcgagtgggaaaccca
actagcattttaacaaagggaaacattggacccatgaggctatatgttggctctttgcac
tttaatatcactgaggaaatgctcaggggaatatttgagccatttggaaagattgatgac
attaaattgatcagagaccatgaaacaaacagatcacagggctatgggtttataacattc
catgactcagaggatgccaagaaagccttggaacagctgaatggctttgagctggctggt
cgtccaatgaaagtaggtcatgtgacagagagacagggcgagattcagggtgcttccatg
ttggacagtgatgaaatggatcgggcagggatagacctgggagcaactggtcgtctacag
ctgatggccaaattagcagaaggtacggggttccagattcctgagtatgctgcttcagca
ctaaacataacacagcaggcccccgggttggcaccagtttctgctccaggggccagccct
aatgtgtccgccatacttggcagtcaagccccaggacaagacagtacagctccgccaata
gccacccagtgttttatgctatccaacatgtttgatccaactgcggaatcccggtcaagc
tgggaccaggagatccgtgacgatgtgatagaagaatgcaacaagcacggaggagtcctg
catctgtatgtggacaaggcctccccccaaggaaacgtgtatgtcaagtgtcccacaata
tccgcagctgtggcctctgtcagagctctccatgggagatactttggaggcaagatgatt
acggcagcctatgtacccctccccaactatcactccctgttccctgacgccgtcagggct
aaccagctcctgctgccctccacacaggccctgcaggctggctaccccaccaacatgttc
gccgcggtgcagccagtgataagatag
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